Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3461 ATGGCATTGTTCCGTAAGTTCTTCTATAAGAAACCCCCTGATGGCCTTCTTGAAATCACTGAAAGGGTTTATGTCTTTGATTACTGCTTTACCACTGATATTATGGACGAAGACGAATATAAAGTGTATATAGGAGGAATAATTAGGCAAATCGGCGAGCACTTCCCCGACGCTTCATTTATGGTGTTCAACATGAGGGAAGGAGAAAACCAAAGCCATATATCAAGCATTTTGTGTGACTATGACATGACTGTGATGGACTATCCAAGACAATATGAAGGTTGTCCATTACTTACCATGGAGATGATCCATCATTTCTTGAGATCAGGTGAAAATTGGCTTCAACTCGGGCATCAAAATATCGTCTTGATGCATTGCGAACGAGGTGGATGGCCGGTTTTAGCATTTATGCTGGCTGCGCTCTTGATTTATAGAAAAATGTATACAGGGGAACAAAAAACACTGGATATGATATATAAGCAAGCGCCTCGGGAACTTTTGCAATTGATGTCACCATTGAATCCGTTACCTTCACAACTAAGGTATCTTCAGTACATATCAAGAAGAAATGTTGGTTCAGAATGGCCTCCTCTGGATAGGGCACTTACGTTGGACTGTGTAATTATACGACAAATTCCTAACATGGATGGAGAGGGTGGTTGCCGTCCTATATTTAGGATATATGGACAAGACCCTTTTATTCCTGCGAATCGGACTCCCAAAGTTCTCTTTTCTACTCCGAAAAAGAGCAAACTTGTTCGGCACTACAAGCAGACTGATTGCGAACTAGTCAAGATTGACATCCATTGTCATGTTCAAGGCGATGTTGTACTTGAGTGTATTAGTTTGGAAGGTGATTTGGAACGTGAAGAAATGATGTTCCGGGTTATGTTTAATACAGCATTCATAAGATCAAATATTTTGATGCTTAACCGTGATGAAATCGACATGTTGTGGAATGCTAAAGATCATTTCCCTAAAAATTTTAGAGTAGAGGTTCTTTTCTCAGATATGGAGGCTTCTTCATCTTCTGTTATTTCAATCGATCTTCCTCGTATTGAGGAGAAAGAAGGTCTGCCTGTTGAAGCATTTGCTAAGGTTAAGGAAATTTTCAGCCAGGTTGAGTGGCTCGATTCGAAGTCCGATGTAGCAAATATGCTACAACAGATCACAGCATCAAATATCCTTCTAGAAAGATTGGACGGTGGATCTCCGGGTTCTCCAAGCGCCTTGCTAGCCGAGTCATTGTCTGGAAGATTTAGATTTGATTCAAAGTCACCGAATGAAACTAACAATTTCAAATCTTCCTTTTATGATGATCTTCCCATGTCTCCATTGCGATTGTCGGAGGATGTTTCAATGGATAAATTGATTGAATCATTAAAAATAGAGGAATTGTCAGAAGAGAAAATCGAGGCTCTTGCAAGTTTAGGTCAAGCAAGCAAACCTATTCCTTTATTTGATCTGTCAAATGATTCAGATTCTACTAAAGTTGAGACTGAATCATCAGAATCAAAACAATCATTGGAAAATTATCCTAAATTTCCTGTTTCTACAGCTCAGGTGGAACAATCTGGCCCCTTAATTGAACCATCAATAGATGCAGATTCGATGAAAATGAAGACTGGATCATTGGAATCTGAGGAAAAGAAGATTGAATCATTAGCATCAACGGCGGTATTGGAAAATGACACAATGCTTCCTGCATATGACTCTCCTACTAATGCAAATTCTGTGAAAAGTATTGGACTGTTTGGATCGAAAGAAAAAGAGATTGAATCATTAGACTCAAAGGTACCGATGGAAAATGATAGCGTAGTTAAATCCAAACCAAAGATGCGTCCAGAAGCTGATATAAGAAGTCTGAATTCTGCAGGTGAAGAGAATTTTTCAGTGTCCTCATTTGAATCAATTGGGGATGCTACAATGGAAAAGAAGAAAAAACCTTTAGATTTAACAACATCACCAGAAAATAACATCAAGACTCCTGCACCGGCAGATTCAAATCCTAATACTATGAAGTTTGAATCATTAGAATCGAAGGCACCTGTGGAAAATGATACCAAGTTTCCTATGTCTACAGCTCAAGCAAAACAATTTACTCCCTCAATCAAACCATCCACGGAAGCAAATTCAGTGAAACAGTCGATGGAGCAATTAGAGTCAAAGAAAAAGGATGTTGAATCATTAGAATCAAAGTCATCATTGGAAAATGATACCAAGGGGGAACAACAATCTGTTCCCTTAATTCAAACATCAGCGGATGCAAGTTCAATGAAAACAATGAATGAGAAATCAGAATCAACGGCGTTGTCAGAAAATGATATCAAGAGTCCCACATCCAAGGTTGAGAAGGATCAAACTAGTCCTTTACTTGAATCCACCGTTGATGAAAAATCAATTAAAAAGAAGATTGATCCTCAAGAATTGCAGGTTTCTCTTCAGCTACCAACCCAATCGAAAATAATTTCTCCACGGATACATCAAGCTAATCGATCAGCTACAGCTTCTTTTTCTTCTAATTCCTCGTTAGGTTCACCTGGATCATCGGCTTTGGGAATAACATCTGTGTTGCAAGATCAGGCACCAATGGATATCAAAGAAGACGTCACTCATGCAGTGTCGGTATCTCCTCCTTCAGACTCAAAGGTGCCAAAGTCTGTAGAGACTTGTTCTACAAGTATTCCTACAACATCATCAACACCAACATTGCTTCCATCTTCGCAGTTAAAGTCTTCAGTAGATCCTCCTGGTGCTGTCGAAAAGACTTTAAAACCCCTTGTTTCTATTCCTCCTCCACCTCCACCTCCTCAACAAGAGCCTACTTCAAATTTGATGCAATCTACTATTACTTTTACACAACATGGTGAAAATTCAATGCATGATAGAAATCAGATATCATCAGCTATTCCTCCTCCTCCCCCTCCTCCGTCCCTTCCCGAAACATCTATTTCCACCATCATAGATTCATCGAAAAGTCCTCCTTGTCCGCCACCTCCACCACCACCATCTTCAACCGGACAAACTTCATCATCTTCAATACCTCCTCCTCCACTTCCTCCTCCACGGAGTATGAACAACTCTGTTGATATGCCTGGTCCTCCTCCTCCACCTCCACCACCAAGCCAACCTGGAACCACTCCTGGTTCCACTTCTACACAGTTCGTGCCGCCACCACCCCCTCCTCCAGCTTCTGCAACCCAAAATTCTTTGTCTAAAAGCTCTCCAAATGTTCCACCTGTACCTCCACCTCCTTCTGCCAATGGCACTTCCATACCTCCGCCTCCTGGAATTCCTGGACCACCTCAGCCTCCTGCAATTCCTGGACCGCCTGGAAATGCACCTCCAGTTCCTGGACCACCTGGAAATGTGCCCCCAATACCTGGACCACCTGGCGGTGCATTAAAGGGACGCGGATTGCTACGAACTACTGCAAAAACTCAGACTAAAAGGAGCAATCTAAAACCTTATCATTGGTTAAAGTTAACAAGGGCCATGCAAGGTAGCTTGTGGGCTGAGACACAGAAACCTGATGAAGCTAGTAGGGCTCCTGAGTTTGACATGTCTGAACTTGAGACTCTTTTCTCTGCAGCTACTCCAAGTAATAATAGTGAAAAAGGAGGAAATTCAAATCGCCGTGGCTCATCGCAAAAACCTGACAAAGTTCAATTAATTGAACTCAGACGAGCGTATAACTGTGAGATTATGCTTACAAAAGTCAAAATCCCATTGCCTGATTTAATGGGTCATGTTCTCGCATTGGACGACTCCGTGTTATATGTTGATCAGGTTGACAACCTCATAAAGTTCTGTCCGACTAAAGAAGAGATGGACCAGCTCAAGGCATACACTGGAGATAAGGACAATTTGGGGAAGTGTGAACAGTTCTTCTTAGAATTAATGAAAGTTCCAAGAGTGGAAAGCAAGCTAAGAGTTTTCTGTTTTAAGATGCAATTCTGCTCCCAGGTTTTAGAGCTCAGAAGAGATTTGAATATTGTAAATTCTGCATCTGAAGAGGTAAGTAATGTTATATTTTTCATTTTAATATTCTATTTCTCAAATCAACTTTCCGTTCTCTTCAGCTTTCGTTGTTATGTGTATCAGATAAGGAATTCAGTCAAATTGAAAAGAATCATGCAGACCATTCTTTCGCTAGGCAATGCTTTGAACCATGGAACTGCAAGAGGTGCTGCTGTTGGGTTCCGATTGGATAGTCTTCTTAAACTTACTGATACACGAGCCCGAAACAACAAAATGACCCTCATGCATTATCTTTGTAAGGTGCTTTCTGAAAAGCTTCCAGAACTTTTAGATTTCCACAAAGACCTAGTTAATTTGGAGGCTTCAAGCAAGATACAATTGAAATATTTGGCAGAAGAAATGCAAGCTATTAGTAAAGGACTGGAGAAAGTAATTCAAGAACTGACTGCATCCGAGAATGATGGACCTGTGTCAGAAACCTTCTGCCAGATTCTGAAAGAATTTCTTAGTGACGCTGAAGCTGAAGTGAGGTCTTTGGCTCAGCTTTATGCCAATGTGGGTAGAAATGCAGATGCATTAGCGTCATACTTCGGAGAAGACCCAGCACGTTGCCCATTTGAACAAGTTGTAACTACTCTGCTAAACTTTGTGAGGATGTTCATCCGAGCACACGATGAAAATTGCAAGCAGATTGAATATGATAAAAAGAAAGCCGAGAAGGAAGCAGCTGCAGAAAATGAAAAGTTGAAGCATGCTTCTAAAAGTGACTCTCCGCGTATGATGAGAACCACCATCAAGAGCGGTGATACATGA 4794 0.4091 MALFRKFFYKKPPDGLLEITERVYVFDYCFTTDIMDEDEYKVYIGGIIRQIGEHFPDASFMVFNMREGENQSHISSILCDYDMTVMDYPRQYEGCPLLTMEMIHHFLRSGENWLQLGHQNIVLMHCERGGWPVLAFMLAALLIYRKMYTGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYISRRNVGSEWPPLDRALTLDCVIIRQIPNMDGEGGCRPIFRIYGQDPFIPANRTPKVLFSTPKKSKLVRHYKQTDCELVKIDIHCHVQGDVVLECISLEGDLEREEMMFRVMFNTAFIRSNILMLNRDEIDMLWNAKDHFPKNFRVEVLFSDMEASSSSVISIDLPRIEEKEGLPVEAFAKVKEIFSQVEWLDSKSDVANMLQQITASNILLERLDGGSPGSPSALLAESLSGRFRFDSKSPNETNNFKSSFYDDLPMSPLRLSEDVSMDKLIESLKIEELSEEKIEALASLGQASKPIPLFDLSNDSDSTKVETESSESKQSLENYPKFPVSTAQVEQSGPLIEPSIDADSMKMKTGSLESEEKKIESLASTAVLENDTMLPAYDSPTNANSVKSIGLFGSKEKEIESLDSKVPMENDSVVKSKPKMRPEADIRSLNSAGEENFSVSSFESIGDATMEKKKKPLDLTTSPENNIKTPAPADSNPNTMKFESLESKAPVENDTKFPMSTAQAKQFTPSIKPSTEANSVKQSMEQLESKKKDVESLESKSSLENDTKGEQQSVPLIQTSADASSMKTMNEKSESTALSENDIKSPTSKVEKDQTSPLLESTVDEKSIKKKIDPQELQVSLQLPTQSKIISPRIHQANRSATASFSSNSSLGSPGSSALGITSVLQDQAPMDIKEDVTHAVSVSPPSDSKVPKSVETCSTSIPTTSSTPTLLPSSQLKSSVDPPGAVEKTLKPLVSIPPPPPPPQQEPTSNLMQSTITFTQHGENSMHDRNQISSAIPPPPPPPSLPETSISTIIDSSKSPPCPPPPPPPSSTGQTSSSSIPPPPLPPPRSMNNSVDMPGPPPPPPPPSQPGTTPGSTSTQFVPPPPPPPASATQNSLSKSSPNVPPVPPPPSANGTSIPPPPGIPGPPQPPAIPGPPGNAPPVPGPPGNVPPIPGPPGGALKGRGLLRTTAKTQTKRSNLKPYHWLKLTRAMQGSLWAETQKPDEASRAPEFDMSELETLFSAATPSNNSEKGGNSNRRGSSQKPDKVQLIELRRAYNCEIMLTKVKIPLPDLMGHVLALDDSVLYVDQVDNLIKFCPTKEEMDQLKAYTGDKDNLGKCEQFFLELMKVPRVESKLRVFCFKMQFCSQVLELRRDLNIVNSASEEVSNVIFFILIFYFSNQLSVLFSFRCYVYQIRNSVKLKRIMQTILSLGNALNHGTARGAAVGFRLDSLLKLTDTRARNNKMTLMHYLCKVLSEKLPELLDFHKDLVNLEASSKIQLKYLAEEMQAISKGLEKVIQELTASENDGPVSETFCQILKEFLSDAEAEVRSLAQLYANVGRNADALASYFGEDPARCPFEQVVTTLLNFVRMFIRAHDENCKQIEYDKKKAEKEAAAENEKLKHASKSDSPRMMRTTIKSGDT* 1598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3461 1597 MobiDBLite consensus disorder prediction 718 738 - -
Tpr1g3461 1597 MobiDBLite consensus disorder prediction 488 510 - -
Tpr1g3461 1597 Pfam Formin Homology 2 Domain 1367 1547 IPR015425 -
Tpr1g3461 1597 Pfam Formin Homology 2 Domain 1146 1342 IPR015425 -
Tpr1g3461 1597 MobiDBLite consensus disorder prediction 942 966 - -
Tpr1g3461 1597 MobiDBLite consensus disorder prediction 863 1132 - -
Tpr1g3461 1597 Pfam C2 domain of PTEN tumour-suppressor protein 200 336 IPR014020 -
Tpr1g3461 1597 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 187 IPR029021 -
Tpr1g3461 1597 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Tpr1g3461 1597 SMART PTEN_C2_2 197 337 IPR014020 -
Tpr1g3461 1597 MobiDBLite consensus disorder prediction 595 802 - -
Tpr1g3461 1597 MobiDBLite consensus disorder prediction 875 914 - -
Tpr1g3461 1597 Gene3D Protein tyrosine phosphatase superfamily 12 191 IPR029021 -
Tpr1g3461 1597 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1219 1574 - -
Tpr1g3461 1597 MobiDBLite consensus disorder prediction 1195 1221 - -
Tpr1g3461 1597 Coils Coil 1548 1582 - -
Tpr1g3461 1597 MobiDBLite consensus disorder prediction 1013 1046 - -
Tpr1g3461 1597 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Tpr1g3461 1597 Gene3D - 196 341 - -
Tpr1g3461 1597 Coils Coil 710 733 - -
Tpr1g3461 1597 MobiDBLite consensus disorder prediction 624 638 - -
Tpr1g3461 1597 MobiDBLite consensus disorder prediction 687 717 - -
Tpr1g3461 1597 MobiDBLite consensus disorder prediction 1569 1584 - -
Tpr1g3461 1597 MobiDBLite consensus disorder prediction 927 941 - -
Tpr1g3461 1597 SMART it6_source 603 1596 IPR015425 -
Tpr1g3461 1597 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1144 1573 IPR015425 -
Tpr1g3461 1597 MobiDBLite consensus disorder prediction 739 795 - -
Tpr1g3461 1597 MobiDBLite consensus disorder prediction 1076 1132 - -
Tpr1g3461 1597 MobiDBLite consensus disorder prediction 1195 1218 - -
Tpr1g3461 1597 MobiDBLite consensus disorder prediction 992 1006 - -
Tpr1g3461 1597 MobiDBLite consensus disorder prediction 595 617 - -
Tpr1g3461 1597 Gene3D Formin, FH2 domain 1163 1587 IPR042201 -
Tpr1g3461 1597 MobiDBLite consensus disorder prediction 1569 1597 - -
Tpr1g3461 1597 MobiDBLite consensus disorder prediction 828 848 - -
Tpr1g3461 1597 MobiDBLite consensus disorder prediction 653 676 - -
Tpr1g3461 1597 PANTHER FORMIN-J 1 681 - -
Tpr1g3461 1597 PANTHER FORMIN-J 702 1591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3461 Tpr-Chr1 38877863 38887531 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3461 1 410 FH2 protein (formin) Gene Family AT2G25050 70.316 0.0 651
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3461 - - gsj:114393863 1692.94