Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3460 ATGGCATTGTTCCGTAAGTTATTCAATAAGAAACCCCCTGATGGCCTTCTTGAAATCACTGAAAGGGTTTATGTCTTTGATTATTGCTTTACCACGGATGTTATGGACGAAGACAAATATAAAGTTTATATAGGAAGAATAATTAGGCAAATTGGCGAGCACTTCCCCGGCGCTTCATCTATGGTGTTCAACATGAGGGAAGAAGGAGAAAACCAAAGCCATATATCAAGCATTTTGTGTGAGTATGACATGACTGTGATGGAGTATCCAAGACAATATGAAGGTTGTCCATTACTTAACATGGAGATGATCCATCATTTCTTGAGATCAGGTGAAAATTGGCTTCAACTCGGGCAGCGAAATATCGTTTTATTGCATTGTGAACAAGGTGGATGGCCGGTTTTAGCATTTATGCTGGCTGCACTCTTGATTTATAGAAAAATGTGTACAGGGGAACATAAAACACTGGATATGATATATAAGCAAGCGCCTCGGGAACTTTTGCAATTGATGTCACCATTGAATCCGTTACCTTCACAATTAAGGTATCTTCAGTACATATCAAGAAGAAATGTTGGTTCAGAATGGCCTCCTCCGGATAGGGCACTTACGTTGGACTGTGTAATTATACGACAAATTCCTAATATGGATGGAGAGGGTGGTTGCCGTCCTATATTTAGGATATCTGGAAAAGACCCTTTTATTCCTGCGAATCGGACTCCCAAAGTTCTCTTTTCTACTCCGAAAAAGAGCAAACTTGTTCGGCACTACAAGCAGACTGATTGCGAACTAGTCAAGATTGACATCCATTGTCATGTTCAAGGCGATGTTGTACTTGAGTGTATTAGTTTGGAAGGTGATTTGGAACGTGAACAAATGATGTTCCGGGTTATGTTTAATACAGCATTCATAAGATCAAATATTTTGATGCTTAACCGTGATGAAATTGACATGTTATGGAATGCTAAAGATCATTTCCATAAAAATTTTAGAGTAGAGGTTCTTTTCTCAGATATGGAGGCTTCTTCGTTTTCTGTTATTTCAATCGATCTTCCTCGTATTAAGGAGAAAGAAGGTCTACCTGTTGAAGCATTTGCTAAAGTTAAGGAAATTGTCAGCCAGGTTGAGTGGCTCGATTCGAAGTCTGATGTAGCAAATTTGATACAACGGATCACAGCATCAAATATCCTTCTAGAAAGATTGGACGGTGGAGCTCCGGGTTCACCAAGCGCCTTGCTAGCCGAGTCATTGTCCGGAAGATTTAAATTTGATTCAAAGACACCAAACGAACCAAATAAGCAAGCATCAGAAGAGAAATTGTCAGAAGAGAAAATGATTGAATCATTAAAATTAGAGGAATTGTCAGAAGAGAAAACCGAGACTCTTACAAGTTTAGGTCAAGCAAGCAAACCTAGTCCTTCAATTGATCTGTCAAAAGATTCAGATTCTACTAAAGTTGATACTGAATCATCAGAATCAGAACAATCATTGGAAAATGATCCTAAATCTCCTGCTTCTACAGCTCAGGTGGAAGAATACGTCTCCTTAATTGAACCATCAATAGATGCAGATTCGATGAAAAAGAACTCTGGATCATTGGAATCTGAGGAAAATAACATTGAATCATTAGCATCAAAGGCGGTATTGGAAAATGACACCATGCTTCCTGCATCTGACTCTTCTACTAATGCACCAATGGAAAATGAGATTGAATCATTAGACTCAAAGGCACCGATGGAAAATGATAGTGTAGTTAAATCCAAACCAAAGTTGCGTCCAGAAGCTGATATACGAAGTCCGAATCCTGCAGGTGAAGAGAAATTTCCGGTGTCCTCATCTGAATCAATTGGGGATGCTACAATGGAAAAGAAGAAAAAACCGTTAGATTTAACGACATCACCAGAAAATAACATCAAGACTCCTGCACCGGCAGATTCACATCCTACTGCGGTGAAGATTGAATCATTAGACTCGAAGGCACCGATGGATAATGACAGTGTAGTTAAATCCAAACCAAAGATGCGTCCAGAAGCTGATATAAGAAGTACGAATTCTGCAGGTGAAGAGAAATTATCAGTGTCCTCATTAATTGTTTGCCGGGGTATAATGACGTTGATTAATTGCCGTTGTTGTTTGTGTCGTGTGTCATCGTAA 2154 0.3923 MALFRKLFNKKPPDGLLEITERVYVFDYCFTTDVMDEDKYKVYIGRIIRQIGEHFPGASSMVFNMREEGENQSHISSILCEYDMTVMEYPRQYEGCPLLNMEMIHHFLRSGENWLQLGQRNIVLLHCEQGGWPVLAFMLAALLIYRKMCTGEHKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYISRRNVGSEWPPPDRALTLDCVIIRQIPNMDGEGGCRPIFRISGKDPFIPANRTPKVLFSTPKKSKLVRHYKQTDCELVKIDIHCHVQGDVVLECISLEGDLEREQMMFRVMFNTAFIRSNILMLNRDEIDMLWNAKDHFHKNFRVEVLFSDMEASSFSVISIDLPRIKEKEGLPVEAFAKVKEIVSQVEWLDSKSDVANLIQRITASNILLERLDGGAPGSPSALLAESLSGRFKFDSKTPNEPNKQASEEKLSEEKMIESLKLEELSEEKTETLTSLGQASKPSPSIDLSKDSDSTKVDTESSESEQSLENDPKSPASTAQVEEYVSLIEPSIDADSMKKNSGSLESEENNIESLASKAVLENDTMLPASDSSTNAPMENEIESLDSKAPMENDSVVKSKPKLRPEADIRSPNPAGEEKFPVSSSESIGDATMEKKKKPLDLTTSPENNIKTPAPADSHPTAVKIESLDSKAPMDNDSVVKSKPKMRPEADIRSTNSAGEEKLSVSSLIVCRGIMTLINCRCCLCRVSS* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3460 717 PANTHER - 1 590 - -
Tpr1g3460 717 MobiDBLite consensus disorder prediction 554 569 - -
Tpr1g3460 717 SMART PTEN_C2_2 198 338 IPR014020 -
Tpr1g3460 717 PANTHER FORMIN-J 1 590 - -
Tpr1g3460 717 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 188 IPR029021 -
Tpr1g3460 717 MobiDBLite consensus disorder prediction 525 546 - -
Tpr1g3460 717 Gene3D Protein tyrosine phosphatase superfamily 10 192 IPR029021 -
Tpr1g3460 717 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Tpr1g3460 717 Gene3D - 197 342 - -
Tpr1g3460 717 MobiDBLite consensus disorder prediction 664 684 - -
Tpr1g3460 717 MobiDBLite consensus disorder prediction 573 601 - -
Tpr1g3460 717 MobiDBLite consensus disorder prediction 480 496 - -
Tpr1g3460 717 MobiDBLite consensus disorder prediction 460 479 - -
Tpr1g3460 717 Pfam C2 domain of PTEN tumour-suppressor protein 199 337 IPR014020 -
Tpr1g3460 717 MobiDBLite consensus disorder prediction 422 686 - -
Tpr1g3460 717 Coils Coil 432 457 - -
Tpr1g3460 717 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 339 IPR035892 -
Tpr1g3460 717 MobiDBLite consensus disorder prediction 431 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3460 Tpr-Chr1 38869259 38876502 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3460 1 409 FH2 protein (formin) Gene Family AT2G25050 68.293 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3460 - - cam:101501499 962.214