Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3455 ATGGCAGGGAGGCACTGTTACAAGGATGTGATTCCATTCACAGCAATGGTTGCAATGGAGTGCTCAAACGTTGGTGTCAGTGTTCTATTCAAAGCAGCTACTCAAATGGGATTGAGTTACTATGTCTTCATCGCTTATTCATATGTTATCTCTACTCTTGTTCTCCTTTTGCCTCTCCCCTTCTTCTTCAAACGGTCAAGAGGGCTTCCTCCTTTGAATGTGTCTCTAATCTTCAGAATTTTTCTCCTTGGAGTTTTGGGAGTTGTAGCTCAGCTCTTTGGATATAAAGGACTTCAATACACCACACCTACTCTTTCTTCTGCTCTTACCAACCTTATACCTGCTTTTACATTCATCCTAGCTATCTTTTTCAGGATGGAGAAGGTAAATATAAGATCAAAAAGCACTCAAGCAAAAATATTGGGATCTACAATATCAATATTAGGTGCACTCATAGTTGTTCTTTACAAGGGTCCAACAATCATACCCTCATCAATACAACCATCACCACCACCTATTCTTAATTCTCCAATAAGTTCAACATCAGAATCAAATTGGGTTCTTGGTGGATCTCTAATTGTTATTGAGGCTCTTATCATTCCAATTTGGTACATTGTTCAGACTAATGTTATAAAACAATATCCATCAGAGATTATTGTGGTCTTTTTATACAACCTATGTGGAACACTAGTGTCTGTACCAGTATGCTTACTACTTGAATCAAATTTGAGTGCTTGGAAGATAAATCATGACATAACATTGTTCTCCATTTTATACTCGGGAATTTTTTGCACAGGACTAAGTTCTCTTGTTCACACTTGGGGACTCCATGTTAAAGGACCAGTATATATATCACTCTTTAAGCCTTTGTCAATAGCTATTGCTGCATCTTTCAGTGCTATATTCCTTGGTGATGCACTCTATTTTGGAACTGTTGTTGGAGCAGTAATAATATCAATTGGATTTTATGCTGTTTTATGGGGAAAATCCAAAGAAGAATTGAATGAAGATTTTGACATAGGTAGAGTTTCACTTCCATCCAATACTAAAACTCCTTTGTTGAAAGTATCAAATGTGGTAGATAGAGGAATCACACATAATGATTGTTGA 1110 0.3685 MAGRHCYKDVIPFTAMVAMECSNVGVSVLFKAATQMGLSYYVFIAYSYVISTLVLLLPLPFFFKRSRGLPPLNVSLIFRIFLLGVLGVVAQLFGYKGLQYTTPTLSSALTNLIPAFTFILAIFFRMEKVNIRSKSTQAKILGSTISILGALIVVLYKGPTIIPSSIQPSPPPILNSPISSTSESNWVLGGSLIVIEALIIPIWYIVQTNVIKQYPSEIIVVFLYNLCGTLVSVPVCLLLESNLSAWKINHDITLFSILYSGIFCTGLSSLVHTWGLHVKGPVYISLFKPLSIAIAASFSAIFLGDALYFGTVVGAVIISIGFYAVLWGKSKEELNEDFDIGRVSLPSNTKTPLLKVSNVVDRGITHNDC* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3455 369 PANTHER WAT1-RELATED PROTEIN 10 333 IPR030184 GO:0016021|GO:0022857
Tpr1g3455 369 Pfam EamA-like transporter family 36 154 IPR000620 GO:0016020|GO:0016021
Tpr1g3455 369 Pfam EamA-like transporter family 190 326 IPR000620 GO:0016020|GO:0016021
Tpr1g3455 369 SUPERFAMILY Multidrug resistance efflux transporter EmrE 51 157 - -
Tpr1g3455 369 PANTHER WAT1-RELATED PROTEIN 10 333 - -
Tpr1g3455 369 SUPERFAMILY Multidrug resistance efflux transporter EmrE 225 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3455 Tpr-Chr1 38811282 38814715 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3455 1 363 Nodulin-like Gene Family AT5G40240 52.055 4.44e-132 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3455 - - mtr:MTR_1g014510 568.155