Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3448 ATGAACAAAGTTGTGGAAATTTCTGTGTCACAAAAACCAGAAAGTCTTCTCCTTTTCATTCTTTATTCTGACTCATCACTAGTGGCAACACTACTTGTGTTTTCTCCACTCTCTCTCTCTCTCTCTACCAACTACTCTCTCTCTTTCATCACACTTCTTTTATGTCTTGCAATGGGAACAAGTCTAAGCATTCCCAAAACTGAAAAGTTTTCTGAAGATGGTGAAAATGACCAGCTTAGATATGGATTATCATCTATGCAAGGATGGCGTGCAACAATGGAAGATGCACATGCGGCACATCTTGATGTGGATTCATCCACTTCTTTTTTTGGCGTTTATGACGGTCATGGAGGTAAGGCGGTTGCAAAGTTTTGCGCCAAGTATCTTCACCAACAGGTACTCAAGAGTGAAGAATACATAGCTGGAGATGTTGGAACATCTCTTCAGAAAGCATTTTTCAGAATGGACGAGATGATGCGTGGTCAAAGGGGATGGAGGGAACTAGCAGTCTTGGGTGATAAGGTAAAAGGGTTCAATGGAATGATTGAAGGATTGATTCGGTCTCCAAGATGCAGTGGCGATAATAAGGACCAAAGTGATGATGATTGGACCTTTGAGAAGGGGCCTCATTCTGATTTTGATGGACCGACTTCAGGAAGTACTGCCTGTGTCGCAATCATTCGAAACAACCTACTTTTTGTTGCAAATGCTGGTGATTCACGCTGCGTAATATCTAGGAACGGTCAGGCATACAATTTATCTAGAGACCACAAACCTGAACTTGCGATTGAGAAGGAAAGAATATATAAAGCTGGTGGTTTTATTCATGCAGGACGAGTTAACGGGAGTTTAAATCTTGCAAGAGCTATAGGTGACATGGATTTTAAGAATAATAGATTTCTTTCTGCTGAAAAACAAGCTGTGACCGCCAATCCAGACATAAACACTGTTGACCTTCATGACGAAGATGAATTTATGGTGATAGCTTGTGATGGCATATGGGATTGTTTGTCAAGCCAACAATTGGTAGATTTTGTACGTCAAGAACTTCTCTTGAAAACCAAACTTTCTGAGGTTTGTGAAAGAGTGCTAGACCGGTGTTTGGCGCCATCATTAGCTGTTGGTGATGGATGCGATAACATGACAATGATCTTGGTGCAGTTCAAAAAACCGGTGCAGACTAGTGCACCAGCTCAAGAACAATCACCTTCAAATGAACAAGGTGCATCTGAACCAAGATTGGAGGACTGTTGA 1254 0.4155 MNKVVEISVSQKPESLLLFILYSDSSLVATLLVFSPLSLSLSTNYSLSFITLLLCLAMGTSLSIPKTEKFSEDGENDQLRYGLSSMQGWRATMEDAHAAHLDVDSSTSFFGVYDGHGGKAVAKFCAKYLHQQVLKSEEYIAGDVGTSLQKAFFRMDEMMRGQRGWRELAVLGDKVKGFNGMIEGLIRSPRCSGDNKDQSDDDWTFEKGPHSDFDGPTSGSTACVAIIRNNLLFVANAGDSRCVISRNGQAYNLSRDHKPELAIEKERIYKAGGFIHAGRVNGSLNLARAIGDMDFKNNRFLSAEKQAVTANPDINTVDLHDEDEFMVIACDGIWDCLSSQQLVDFVRQELLLKTKLSEVCERVLDRCLAPSLAVGDGCDNMTMILVQFKKPVQTSAPAQEQSPSNEQGASEPRLEDC* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3448 417 MobiDBLite consensus disorder prediction 393 417 - -
Tpr1g3448 417 Pfam Protein phosphatase 2C 201 370 IPR001932 -
Tpr1g3448 417 Pfam Protein phosphatase 2C 80 160 IPR001932 -
Tpr1g3448 417 Gene3D - 57 389 IPR036457 -
Tpr1g3448 417 PANTHER PROTEIN PHOSPHATASE 2C 55 400 IPR015655 GO:0004722|GO:0006470
Tpr1g3448 417 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 55 400 - -
Tpr1g3448 417 ProSitePatterns PPM-type phosphatase domain signature. 109 117 IPR000222 GO:0043169
Tpr1g3448 417 SUPERFAMILY PP2C-like 61 389 IPR036457 -
Tpr1g3448 417 CDD PP2Cc 80 388 IPR001932 -
Tpr1g3448 417 MobiDBLite consensus disorder prediction 393 409 - -
Tpr1g3448 417 SMART PP2C_4 70 386 IPR001932 -
Tpr1g3448 417 ProSiteProfiles PPM-type phosphatase domain profile. 80 388 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3448 Tpr-Chr1 38769363 38773852 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3448 58 391 PP2C-type Phosphatase Gene Family AT2G25070 75.150 0.0 538
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3448 K17499 - gmx:100793667 574.704