Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3444 ATGTTTGTTTTTTCAATTGTACAAAACAAAAACCAAACAACCATGTCAAATTCTTGTTCTTCCTCAAACATCATTAATCCCTCCAAAAAAATCCTTCTTTTTCTCATTTCACTACTCTTCACTCTTTCTTCCTTCCCAACAAAAACAAACTCACTTTTCTTCAACATAACAAATTTCGACGACCCAACCGTCGCTAAAAACATTTCATTCCAAGGTGACGGAAGAATCACCAACGGTTCCATTGATCTCAACAAAGTAAGTTACCTTTTCCGTGTTGGTAGAGCAATCTATTCACAACCATTACATTTATGGGACAAAAACACAAAAACTCTCACTAGTTTCACCACACGTTTCACTTTCACAATCAATAGTTTAAACGACACTTCCTATGGTGACGGTTTTGTGTTTTTTTTAGCTCCTTTAGGATATCAAATTCCACCTAATTCAGCTGGTGGTGTTTTTGGTCTTTTTAATGCTACTACAAATAGTGATTTTGTTATGAACTATGTTGTTGCTGTTGAATTTGATACTTTTGTTGGTTCTATTGATCCACCAATGAAACATGTTGGTATTGATGATAATGCTTTGACTTCTGTTGCTTATGGAAAATTTGATATTGATAATAATCTTGGTAGAGTTTGTCATGTTTTGATTGATTATAGTTCTGATAAAAAGATTTTGGAAGTTTTTTGGTCTTTTAAAGGAGGTGATGGAAATTTTGGGAATTCTTCAATTTCTTATCAGATTGATCTTATGAAGAAAATGCCTGAATTTGTTAATATTGGTTTTTCGGCTTCAACGGGTCTTTTAACCGAAAGTAATGTTATTCATTCGTGGGAGTTTAGTTCGAATTTGAAATCGGATTCTACCGCAGATGTTTTGTTAGAGGGAAATGGAAAAAAAGGGTCTTTGAAAACGGTTGTGATTATTGTTGCGGTGATTGTTCCGGTTATTTTGGTATTTTTGATAGCGAGTATTGTTGGTTGGGTGATAGTGAAGAGGAAAAGGAAGAGTCTTGATGAAGGGTTGGATGAATATGGGATACCTGTTCCGGTGAAATTTGATTTGGATAAAGGGACTATACCGAGAAGATTTGAATATAGCGAATTAGTTGCGGCTACTAATGGTTTTGCAGATGATAGAATGCTTGGAAGGGGAGGGTATGGACAAGTTTACAAAGGTGCTTTGAGTTATTTAGGTAAGGTTGTTGCTGTGAAGAGGATTTTTGCCGATTTCGAGAATTCAGAAAGTGTTTTCATCAACGAGGTTAGGATTATAAGCCGATTAATACATAGAAACTTGGTTCAATTCATAGGTTGGTGTCATGAACAAGGCGAGTTTCTTTTAGTTTTTGAGTTCATGCCTAATGGAAGCCTCGACACACATTTATTTGGTGACAAGAAAAGTTTAGCTTGGGAAGTAAGATACAAAATTGCATTAGGTGTCGCGAATGCACTTCGTTATCTTCACGATGACGCCGAGCAATGTGTTCTTCATAGGGATATTAAATCAGCTAATGTGTTGTTGGACACTGATTTCAGCACAAAACTCGGCGATTTTGGGATGGCAAAACTTGTTGATCCAATGTTAAGGACACAAAGAACAGGCGTAGTCGGAACTTATGGTTATCTAGCACCTGAATATATCAATGGAGGAAGGGTTAGTAAAGAATCTGATATGTATAGTTTTGGTATTGTTGCTTTAGAGCTAGCAACTGGTAGAAGGATTTTTCAAGATGGTGAGTTTCATGTACCTTTGATGAATTGGGTTTGGGGACTTTATGTTGAAGGGAATCTTATGAGTGCTGTTGATGAAAGATTGAATTTGGAGTTTGATGTTAATGAAATGAAGAGTTTGCTTATTGTAGGGTTATGGTGTACTCATTCAAATGATAAAGAAAGACCTAAAGCTTATGAAGTGATTAAGGTTCTTAATCATGAAATGGCATTACCTGAACTTCCACTTGATATGCATGATCATGCTCCTCCAATTGTAAGTTTTAGGCCATCCAATTTGGTATCTTTGCAACCACAAATGACTAATAGTCTTGTTTGTGATGGAAGATAG 2067 0.359 MFVFSIVQNKNQTTMSNSCSSSNIINPSKKILLFLISLLFTLSSFPTKTNSLFFNITNFDDPTVAKNISFQGDGRITNGSIDLNKVSYLFRVGRAIYSQPLHLWDKNTKTLTSFTTRFTFTINSLNDTSYGDGFVFFLAPLGYQIPPNSAGGVFGLFNATTNSDFVMNYVVAVEFDTFVGSIDPPMKHVGIDDNALTSVAYGKFDIDNNLGRVCHVLIDYSSDKKILEVFWSFKGGDGNFGNSSISYQIDLMKKMPEFVNIGFSASTGLLTESNVIHSWEFSSNLKSDSTADVLLEGNGKKGSLKTVVIIVAVIVPVILVFLIASIVGWVIVKRKRKSLDEGLDEYGIPVPVKFDLDKGTIPRRFEYSELVAATNGFADDRMLGRGGYGQVYKGALSYLGKVVAVKRIFADFENSESVFINEVRIISRLIHRNLVQFIGWCHEQGEFLLVFEFMPNGSLDTHLFGDKKSLAWEVRYKIALGVANALRYLHDDAEQCVLHRDIKSANVLLDTDFSTKLGDFGMAKLVDPMLRTQRTGVVGTYGYLAPEYINGGRVSKESDMYSFGIVALELATGRRIFQDGEFHVPLMNWVWGLYVEGNLMSAVDERLNLEFDVNEMKSLLIVGLWCTHSNDKERPKAYEVIKVLNHEMALPELPLDMHDHAPPIVSFRPSNLVSLQPQMTNSLVCDGR* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3444 688 CDD STKc_IRAK 383 645 - -
Tpr1g3444 688 ProSiteProfiles Protein kinase domain profile. 377 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3444 688 PANTHER - 36 660 - -
Tpr1g3444 688 Gene3D Transferase(Phosphotransferase) domain 1 454 651 - -
Tpr1g3444 688 Pfam Legume lectin domain 53 288 IPR001220 GO:0030246
Tpr1g3444 688 PANTHER PUTATIVE-RELATED 36 660 - -
Tpr1g3444 688 ProSitePatterns Serine/Threonine protein kinases active-site signature. 497 509 IPR008271 GO:0004672|GO:0006468
Tpr1g3444 688 ProSitePatterns Protein kinases ATP-binding region signature. 383 406 IPR017441 GO:0005524
Tpr1g3444 688 ProSitePatterns Legume lectins beta-chain signature. 171 177 IPR019825 -
Tpr1g3444 688 SUPERFAMILY Concanavalin A-like lectins/glucanases 51 289 IPR013320 -
Tpr1g3444 688 Gene3D Phosphorylase Kinase; domain 1 362 453 - -
Tpr1g3444 688 Gene3D - 49 295 - -
Tpr1g3444 688 CDD lectin_legume_LecRK_Arcelin_ConA 54 285 IPR001220 GO:0030246
Tpr1g3444 688 SMART serkin_6 377 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3444 688 Pfam Protein kinase domain 378 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3444 688 SUPERFAMILY Protein kinase-like (PK-like) 361 666 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3444 Tpr-Chr1 38749148 38751479 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3444 51 657 Receptor kinase-like Gene Family AT5G10530 46.191 3.61e-179 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Tpr1g3444 Pkinase 2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3444 - - vun:114193012 876.7