Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3435 ATGGCTAAATATCACCGGAACAACGTCGGAAACCTCGTTCTCGGCCACCACCACCACAACTCCACTAAAACACCGACATTCTCCAGTCACTTCCGCTTATGGAACTCTCTCTCCATCGCTTCCCTCCGTCGTATCATCCTCGACGCCGTCAGCTGCGGTGCTAGCTCCCGCTACAATCACCGCCGACGAAGCAACATCGACGAATATGAAACCGAAGACTTCTCTTCAGCAACGAGATCAGATTCATCTTCTTCCTTCGATAAACGGAAACAAAAACAGGAAAATCAAAGCTATAAACCGAATGCAAAATCGGAGAAACTTTCCGATCTTCTGAACATAGCGGAGATGGAAACAGAAGCGGAGGCGAAGAAGAAAGAAGAAGCGTTAGAAGAACTGAAGAGACTCGTGAAGGATTTGCACAACGAAGAAGATTCAGTTAAACGGCGAGAAGCTGCAACCACCGTGAGAATGCTCGCTAAGGAGAATTTGGAAGTTCGTGAAACTCTCGCTATGCTCGGAGCGATTCCGCCTCTCGTCACAATGCTTGATTCACAAGAAGTTGATTCTCAGATCGCTTCACTCTATGCATTGCTCAATCTCGGAATCGGAAACGATGCAAATAAAGCAGCCATTGTTAAAGTTGGTTCTGTTCATAAGATGCTTAAGCTTATTGAATCTTCGGATGGTATTGATTCTGCGGTTTCTGAAGCGATTGTTGCGAATTTTCTTGGATTAAGTGCTTTGGATTCGAATAAACCGATAATTGGATCTTCTGCTGCAATACCGTTTTTAGTTAGAACCCTTCAGAGTTTAGATAAGAAAAGGAGTAGAAATCAAGTTAAGCAAGATGCTCTTAGAGCACTTTACAATCTTTCGATCTTCCCAGCCAATATTCCATTCATTTTGGAAACTGATTTGGTACCGTTTTTGATAAACTCGATTGGCGACATGGAAGTGACCGAAAGAAACCTCTCGATCCTTAGCAACTTGGTATCGACTAGAGCGGGTAGAAAGGCGATAAGTAGTGTTCCTGATGCATTTCCTATCTTGGTGGATGTGTTGAATTGGACGGATTCGCCTGAATGCCAGGAAAAGGTTTCGTACATTTTGATGGTTATGTCGCATAAATCTTATGGTGACAAGCAGGCCATGATTGAGGCTGGGATTATGTCGTCGCTCCTTGAGTTGTCGCTTATTGGTACTACTTTGTCTCAGAATCGGGCGTCAAGACTATTGGAAATTTTGAGAATAGACAAAGGGAAACAGGTTTCTGGGAACTATGGCGGAAGTTTAGGCACAGCTGTCTCCGCCCCAATTTGCGGAACTTCATCAAGTTCAAAACCAGATGAAGGAGGAGGAAAATCATGCTTGGAAGAGGACGAAGATATGATGAGCGAGGAGAAGAAAGCAGTGAAACAATTAGTCCAATTAAGTTTACAAAACAACATGAGAAAAATTGTTAAGAGAGCCAATTTGCCGCAAGATATCGTTCCATCAGATCATTTTAAGTCATTCAGTTCAAGTTCAACTTCAAAGAGCTTACCATTCTGA 1551 0.432 MAKYHRNNVGNLVLGHHHHNSTKTPTFSSHFRLWNSLSIASLRRIILDAVSCGASSRYNHRRRSNIDEYETEDFSSATRSDSSSSFDKRKQKQENQSYKPNAKSEKLSDLLNIAEMETEAEAKKKEEALEELKRLVKDLHNEEDSVKRREAATTVRMLAKENLEVRETLAMLGAIPPLVTMLDSQEVDSQIASLYALLNLGIGNDANKAAIVKVGSVHKMLKLIESSDGIDSAVSEAIVANFLGLSALDSNKPIIGSSAAIPFLVRTLQSLDKKRSRNQVKQDALRALYNLSIFPANIPFILETDLVPFLINSIGDMEVTERNLSILSNLVSTRAGRKAISSVPDAFPILVDVLNWTDSPECQEKVSYILMVMSHKSYGDKQAMIEAGIMSSLLELSLIGTTLSQNRASRLLEILRIDKGKQVSGNYGGSLGTAVSAPICGTSSSSKPDEGGGKSCLEEDEDMMSEEKKAVKQLVQLSLQNNMRKIVKRANLPQDIVPSDHFKSFSSSSTSKSLPF* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3435 516 Coils Coil 457 477 - -
Tpr1g3435 516 MobiDBLite consensus disorder prediction 442 463 - -
Tpr1g3435 516 Gene3D - 89 273 IPR011989 -
Tpr1g3435 516 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 1 516 - -
Tpr1g3435 516 Coils Coil 111 149 - -
Tpr1g3435 516 SMART arm_5 162 202 IPR000225 GO:0005515
Tpr1g3435 516 SMART arm_5 204 247 IPR000225 GO:0005515
Tpr1g3435 516 SMART arm_5 376 416 IPR000225 GO:0005515
Tpr1g3435 516 SMART arm_5 248 293 IPR000225 GO:0005515
Tpr1g3435 516 SMART arm_5 294 332 IPR000225 GO:0005515
Tpr1g3435 516 MobiDBLite consensus disorder prediction 69 104 - -
Tpr1g3435 516 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 516 - -
Tpr1g3435 516 Pfam Armadillo/beta-catenin-like repeat 165 200 IPR000225 GO:0005515
Tpr1g3435 516 SUPERFAMILY ARM repeat 131 412 IPR016024 -
Tpr1g3435 516 Gene3D - 274 426 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3435 Tpr-Chr1 38666452 38669507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3435 116 449 U-box Gene Family AT1G24330 29.345 3.08e-32 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3435 - - mtr:MTR_1g014420 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3435 1 38666452 38669507 Tpr7g0693 7 6137532 6139666 PCT