Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3433 ATGAGTAGCTTGGTTGAGAGGCTTCGTGTAAAACCTGATCGCAAGCGATTTAATACTATAGACGAGTCAGATGATGAAGCTGATTTAATGCCCAGAACAAGACCGAAAACTCAGGAAAATTTCGAGAGGATTGTTAGAATCGATGCAAAAGAGAATTCATGCCAAGCATGTGGAGAGAGCGGAAATCTTCTAAGCTGTGAAACATGCACTTATTCTTTCCACACCGGGTGTTTACTCGCGCCACTTAAAAGGCTCCGTTTGAACAACTGGATGTGTCCCGAATGTGTTAGCCCACTTAATGATATTGATAGGATATTAGATTATGAGATGCGTCCCATTGTAGCTGGCGAAACCGGTGCCATTGTAGCTGGCGAAAGTGATGCAAAAGATTTGGAGTCAAAACAAAGTTTTGTCAAACAATATCTTGTTAAGTGGAAGGGACTATCGTATATGCACTGCAAATGGGTGCTAGAGGAAGAGTTTCTGAAGGCTTTCAAGTATAATCCTGGTTTAAAGACCAAAGTAAACAACTTTCATCGTCAAGTGACAGCAGTCCGAAAATTGAATGAAGATTTTGTTGCTATAAGACCTGAATGGACTACAGTTGATCGAATAATTGCTTGCAGAGGCAATGATGATGAGAAGGAATATCTGGTGAAGTGGAAAGAGCTTTCTTATGATGAAAGCAATTGGGAACTTGAGTCAGATATCTCTATGTTTCAGGCAGAAATAGAGAGATTCAATTTATTTCAGTCTAGGTCTAGAAAATTTTCTTATAGCAAGCAAAAAAGAAGTGTTAACAATGATGCTAAATTGATAAAGCAGAAGAAAGAATTTCAACAGTATGAACATAGCCCCGAGTTTCTTTCAGGAGGCACACTACATCCGTATCAACTTGAAGGGTTGAACTTTCTACGATTTTCCTGGTCCAAGCAAACTCATGTTATACTTGCCGATGAAATGGGACTTGGAAAAACCATACAAAGTATTGCTTTCTTAGCATCCCTTTTCAAAGAGAATGTTTCTCCACATCTGGTGGTTGCTCCACTTTCTACACTACGAAATTGGGAGCGCGAATTTGCAACTTGGGCACCTGAAATGAATGTTATTATGTATGTTGGATCTTCCCAAGCTCGTAGCATTGTTAGAGAATATGAATTTTACTTTCCAGAGAAGAACAAGAAAAGTAAAAGCATCAAGTTCGATGTCCTTTTGACATCGTACGAGATGATAAATGTTGATGCTGCAGCATTGAATCCGATAAAGTGGGAGTGCATGATAGTTGATGAAGGTCATCGTCTCAAAAACAAGGATTCAAAATTGTTTTCTTCGTTGAAGCTTTTCTCTAGCAGACATCGCGTGCTTTTGACAGGAACTCCTCTTCAGAACAATCTGGATGAACTCTTTATGCTTATGCACTTCCTTGATGCTGGGAAGTTTGGAATTTTAGAGGAGTTCCAAGAAGAGTTTAAGGATATCAATCAAGAACAACAGATTTCAAGGCTTCATAAACTGTTGGCTCCACATCTACTGCGAAGAGTGAAGAAAGATGTCCTAACTAAGCTACCTCCTAAAAAGGAGCTTATTATACGTGTTGAATTGAGCAGCAAACAAAGAGAATATTATAAGGCGATTTTGACTCGTAATTATAATGTATTAACCGGCCATGGTGGAGCACAAATTTCTCTTATGAATGTTGTTATGGAACTGCGTAAGCTATGTTGTCATCCGTACATGTTGGAAGGAGTTGAACCAGTTCTGACCGAAGAAAAAGAAGCATATAAACAACTGCTGGAATCATCAGGGAAGTTGCAATTGTTGGACAAGCTAATGGTGAAGCTTAAAGAGCAAGGGCATAGAGTCCTTATATATTCCCAATTTCAGAAAATGCTGGACAGGCTTGAAGATTATTGTGTTTACAAGCATTGGCAGTATGAAAGGATAGATGGCAAGGTTGGTGGAGCTGAAAGACAAGTACGGATAGATCGATTTAATGCTAAAGATTCTTCAAAATTTTGTTTTCTTCTTTCTACTAGAGCTGCTGGAGTTGGGATAAACCTCGCAACGGCTGACACAGTTATTTTATATGACAGTGATTGGAATCCTCATGCTGATCTACAAGCGATGGCAAGAGCTCATCGGCTTGGACAAACTAACAAGGTGTTGATTTATAGGCTTATAACACGAGGAACAATTGAAGAAAGGATGATGGAAATAACAAAGAGAAAAATGGTTTTAGAACACTTAGTTGTAGGTGGCATGAAGGGTCAAAATATTAACCAGGAAGAGTTGGATGATATCATAAGATATGGCTCAAAGGAGTTGTTTGCTGATGATAATGATGCAGTGGGAAAATCTCGTCAAATTCATTACGACGATGCTGCTATAGACAGACTATTGGATCGCGATCAAGTTGGAGATGACGAGGCCACTTTGGATGATGAAGATGAAAATGGACTTCTGAAAGCCTTTAAGGTGGCTAATTTTGAATACATAGATGAAGCTGAGGCTGAAGAAAAAATAGAGAATAATTTTTCTGTAAGCAGTTCCGGAGCACAAAATTACTGGGAGGAACTGTTAAAAGGCAGATATGAAAAGAACCAAGTTGAAGAGCTTGATGCCTTGGGCAAAGGGAAGCGAAGCCGCAGAAAGTTGCTGGTATGTCACCACAAGCGTTTTTCTCATTTAGATGATGTAAGCTCCGACGAAGAAGATGAAGATTACGAAGTGAATCTATCTGCGAAAAGTCATTCGAAAAAGAAAGCTCATAGTAATATTGCAGATAACACAGATCCACTTCCTTTAATGGAAGGCGAAGGAAACTCACTTAAAGTACTTGGTTTTAATCAAAGTCAGAGGAACACTTTCCTTCAAATTTTAATGAGGTTTGGCGTCGGTGATTTTGATTGGAAGGAGTTTGCTCCACGCATAAAGCAGAAGACTTGGCACGAAATCGAAGCGTATGGAAACCTTTTCATGTCTCATATTGCTGAAGATATAAATGATTCCCCTACATTCTCAGATGGTGTTCCGAAAGAAGGACTTCAAATACAAGATGTACTTGTTAGAATTGCGGTTCTGCTATCGATAAGGGAAAAAGTGAAGTTTGCATCAGAAAATCCCGGCACTCCACTTTTTTCGGATGACATCTTGTTACGCCATGCAGGAGGCTTCAAAGTAAGAAAGACATGGAAGGAGGAGCATGATTTAGTCTTACTGCGCGCAGTTTTGAAGCATGGATATGGAAAGTGGGCAGCTATAGTTGATGATAAGGATCTGAATATTCAGACGCTCATCTGTCAGGAGTTAAATATGCCCTTTATAAATTTACCGGTGTGCGGACAAGTTGGCAATCAAGTGAAAAATGGTGCAAATATGACAAATATGGAATCCACAAGCAACCAGTCTACGGAGAATAGCGTCAGTGTCATGGAAGTTAATGGAGAACAAGGTTCTTGTGTTGCTGGTAACCAAGAAAAGTTGGATCAAGAGTCCTCTATGATGATCAGTCAATTTAGAAACATGCATAGGAGACAAAATGAGTTTATAAAAAAGAGAATTCTCCTTTTGGAGAAACTTCTCAGTTTAGAAACATGCACAGAGGACTAG 3609 0.3932 MSSLVERLRVKPDRKRFNTIDESDDEADLMPRTRPKTQENFERIVRIDAKENSCQACGESGNLLSCETCTYSFHTGCLLAPLKRLRLNNWMCPECVSPLNDIDRILDYEMRPIVAGETGAIVAGESDAKDLESKQSFVKQYLVKWKGLSYMHCKWVLEEEFLKAFKYNPGLKTKVNNFHRQVTAVRKLNEDFVAIRPEWTTVDRIIACRGNDDEKEYLVKWKELSYDESNWELESDISMFQAEIERFNLFQSRSRKFSYSKQKRSVNNDAKLIKQKKEFQQYEHSPEFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFKENVSPHLVVAPLSTLRNWEREFATWAPEMNVIMYVGSSQARSIVREYEFYFPEKNKKSKSIKFDVLLTSYEMINVDAAALNPIKWECMIVDEGHRLKNKDSKLFSSLKLFSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGILEEFQEEFKDINQEQQISRLHKLLAPHLLRRVKKDVLTKLPPKKELIIRVELSSKQREYYKAILTRNYNVLTGHGGAQISLMNVVMELRKLCCHPYMLEGVEPVLTEEKEAYKQLLESSGKLQLLDKLMVKLKEQGHRVLIYSQFQKMLDRLEDYCVYKHWQYERIDGKVGGAERQVRIDRFNAKDSSKFCFLLSTRAAGVGINLATADTVILYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMEITKRKMVLEHLVVGGMKGQNINQEELDDIIRYGSKELFADDNDAVGKSRQIHYDDAAIDRLLDRDQVGDDEATLDDEDENGLLKAFKVANFEYIDEAEAEEKIENNFSVSSSGAQNYWEELLKGRYEKNQVEELDALGKGKRSRRKLLVCHHKRFSHLDDVSSDEEDEDYEVNLSAKSHSKKKAHSNIADNTDPLPLMEGEGNSLKVLGFNQSQRNTFLQILMRFGVGDFDWKEFAPRIKQKTWHEIEAYGNLFMSHIAEDINDSPTFSDGVPKEGLQIQDVLVRIAVLLSIREKVKFASENPGTPLFSDDILLRHAGGFKVRKTWKEEHDLVLLRAVLKHGYGKWAAIVDDKDLNIQTLICQELNMPFINLPVCGQVGNQVKNGANMTNMESTSNQSTENSVSVMEVNGEQGSCVAGNQEKLDQESSMMISQFRNMHRRQNEFIKKRILLLEKLLSLETCTED* 1203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3433 1202 Pfam CHD subfamily II, SANT-like domain 917 1048 IPR009462 GO:0003677|GO:0006338
Tpr1g3433 1202 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 306 478 IPR014001 -
Tpr1g3433 1202 SMART chromo_7 99 183 IPR000953 -
Tpr1g3433 1202 SMART chromo_7 198 252 IPR000953 -
Tpr1g3433 1202 CDD CD2_tandem 198 247 - -
Tpr1g3433 1202 Gene3D - 99 184 - -
Tpr1g3433 1202 Pfam PHD-finger 54 96 IPR019787 -
Tpr1g3433 1202 SMART helicmild6 632 716 IPR001650 -
Tpr1g3433 1202 SUPERFAMILY Chromo domain-like 190 248 IPR016197 -
Tpr1g3433 1202 ProSitePatterns Zinc finger PHD-type signature. 54 95 IPR019786 -
Tpr1g3433 1202 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 515 769 IPR027417 -
Tpr1g3433 1202 SMART DUF1087_2 831 898 IPR009463 -
Tpr1g3433 1202 Gene3D - 189 249 - -
Tpr1g3433 1202 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 606 767 IPR001650 -
Tpr1g3433 1202 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 266 513 IPR027417 -
Tpr1g3433 1202 ProSiteProfiles Zinc finger PHD-type profile. 51 98 IPR019787 -
Tpr1g3433 1202 CDD SF2_C_SNF 601 727 - -
Tpr1g3433 1202 SMART DUF1086_2 897 1051 IPR009462 GO:0003677|GO:0006338
Tpr1g3433 1202 CDD CD1_tandem 98 180 - -
Tpr1g3433 1202 Gene3D - 1018 1196 - -
Tpr1g3433 1202 SUPERFAMILY Chromo domain-like 66 182 IPR016197 -
Tpr1g3433 1202 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 5 1036 - -
Tpr1g3433 1202 Pfam Helicase conserved C-terminal domain 603 716 IPR001650 -
Tpr1g3433 1202 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 5 1036 - -
Tpr1g3433 1202 Pfam SNF2-related domain 314 580 IPR000330 GO:0005524|GO:0140658
Tpr1g3433 1202 Pfam CHD subfamily II, DUF1087 834 885 IPR009463 -
Tpr1g3433 1202 Gene3D - 523 747 IPR027417 -
Tpr1g3433 1202 Gene3D - 286 522 IPR038718 -
Tpr1g3433 1202 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 97 IPR013083 -
Tpr1g3433 1202 SMART PHD_3 53 96 IPR001965 -
Tpr1g3433 1202 ProSiteProfiles Chromo and chromo shadow domain profile. 200 262 IPR000953 -
Tpr1g3433 1202 SMART ultradead3 290 489 IPR014001 -
Tpr1g3433 1202 Pfam Chromo (CHRromatin Organisation MOdifier) domain 201 248 IPR023780 -
Tpr1g3433 1202 Pfam Chromo (CHRromatin Organisation MOdifier) domain 129 164 IPR023780 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3433 Tpr-Chr1 38649286 38657081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3433 316 777 RAD5 or RAD16-like Gene Family AT1G02670 24.449 9.37e-32 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tpr1g3433 SNF2_N 9.3e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3433 K11643 - gmx:100804203 1761.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3433 1 38649286 38657081 Tpr7g0686 7 6062511 6083340 PCT