Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3432 ATGATGAATGATCTTAGAGATAAATTTCCGATAGGAATGCGTGTTCTTGCTGTTGATGATGATAGAACTTGTCTCAAGATTTTGGAAAAACTTCTCCTAAAGTGTCAATACCATGTTACCACTGCTCAAAACGCGATAACAGCGCTGAACTTGTTGAGAGAAAACAAGAACAATTTTGACTTAGTAATCAGCAATGTTCATATGCCTGATATGGATGGATTCAAGCTGCTTGAGCTTGTTGGACTTGAGATGGACTTACCTGTCATAATGTTTTCGGCAAACGATGATCCAAAGATGGTGCTTAAAGGAATTAATCATGGTGCTTGTGATTATCTGCTGAAACCTGTTATACTGAAAGAGGTACAAACCATTTGGCAGCATGTAATCAGAAAGAAGAAGACTAGCAAAAGAAGCAACCACGACGCGGCAAATTCTGATAGCGGAAATGGAATAGATTCTGCAGTGACAGGAAGTTCTGATCAAAATGAAAGGCCTTCTAGTTCTAGAAAAAGGAAGGAAAAGAATGAAGATGATGATGAAGAGAATGAGGATGATCATGACAATGATGATCCAACCGCGCAAAAGAAGGCTCGTGTTGTTTGGACACCTGCCTTACACCGCAAGTTTGTTGCTGCTGTTAATCAATTAGGCATCGACAAAGCTGTGCCGAAAAAGATTCTTGACTTGATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCTAGCCATCTTCAGAAATATAGACTCTATCTGAAAAGGATTAGTGAAGGGGAAAACCAACAAGCTAATATGGCAGCATTGTTAGGTAGTTCTTCGGATACATCCTATTCAGGAATGACTTCTCTCGGTGGCTCTACACAGTTTCATAACAATCATTACAAATCCTTTGCATCTAACGGTAGTATGAGTAGTATATTCAACACTCCTGCTAATGTGAATATGCATGGATTCTCTTCTTCTGGAACTCCTCTGCTGAATCACACACATAATAATCAGCTAAAGTTCCAATCGGCAATGACTCGCGACAATCTGAACGATGTTCTAAAAATGCCGATTTCTTCTGCAGGACTTGATCAATTGCTACACAGTAAAGGTATTACTGTTAGTACTAATATTCAAACCATGACGAATAAATTTCCAGATTATTATAAACCAAAAGTAACAATGAGTTGCACAAACAATGCCTTTATTTTAGAATCGAATCCTCAAGAGAAACAAGTAGCTGAAGGATACAAAAACTTAGCCTCTCAGAATTCACAGTATCTTCCTTCACTTGAAAACCGAAGGTGCAACGATATTTGGTCAAACACTATGCAATTACCTGGAACAAACTCTTATCTTCCAAGAGAAGGTTTCGGCCATGGTTCTGCGTCTCATAAGGATAACAGAAATGCTGCTATGCCTCATACAGACGCACATGAATTCTGCAATAATGTGCCATTTCAAGGTTGGGACAATAACCATAATAATCATGATGCAAGTTACCATTCTTCTCATGTGGTTGGAAGTTCAATAGGCTCCATGATTCCTGCTGTCAATGCTGTTGAACCAGAAGAAAACTTGGATTATAGTTATTGTGATTCGCTACAAATGAAGCGTGATCGTACCACGGAGCTAACAGAAGGGTCGTCATTCAATCCACATCAGGCATATATGATGAACAACCAGATGAAGTTTCAAAACAGTGGAATCTCTAATAATCCTGGTTCACTCGAAGACGCTGTCCGTGACATGATCAAGCAGAAACAATTATATGCTAATTTATCTGGTGGCACAATGTGA 1782 0.3906 MMNDLRDKFPIGMRVLAVDDDRTCLKILEKLLLKCQYHVTTAQNAITALNLLRENKNNFDLVISNVHMPDMDGFKLLELVGLEMDLPVIMFSANDDPKMVLKGINHGACDYLLKPVILKEVQTIWQHVIRKKKTSKRSNHDAANSDSGNGIDSAVTGSSDQNERPSSSRKRKEKNEDDDEENEDDHDNDDPTAQKKARVVWTPALHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISEGENQQANMAALLGSSSDTSYSGMTSLGGSTQFHNNHYKSFASNGSMSSIFNTPANVNMHGFSSSGTPLLNHTHNNQLKFQSAMTRDNLNDVLKMPISSAGLDQLLHSKGITVSTNIQTMTNKFPDYYKPKVTMSCTNNAFILESNPQEKQVAEGYKNLASQNSQYLPSLENRRCNDIWSNTMQLPGTNSYLPREGFGHGSASHKDNRNAAMPHTDAHEFCNNVPFQGWDNNHNNHDASYHSSHVVGSSIGSMIPAVNAVEPEENLDYSYCDSLQMKRDRTTELTEGSSFNPHQAYMMNNQMKFQNSGISNNPGSLEDAVRDMIKQKQLYANLSGGTM* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3432 593 CDD REC_typeB_ARR-like 15 129 - -
Tpr1g3432 593 Gene3D - 192 255 - -
Tpr1g3432 593 PANTHER TWO-COMPONENT RESPONSE REGULATOR 5 576 - -
Tpr1g3432 593 SMART REC_2 13 125 IPR001789 GO:0000160
Tpr1g3432 593 MobiDBLite consensus disorder prediction 141 163 - -
Tpr1g3432 593 ProSiteProfiles Response regulatory domain profile. 14 129 IPR001789 GO:0000160
Tpr1g3432 593 Pfam Response regulator receiver domain 15 121 IPR001789 GO:0000160
Tpr1g3432 593 Pfam Myb-like DNA-binding domain 198 248 IPR001005 -
Tpr1g3432 593 PANTHER TWO-COMPONENT RESPONSE REGULATOR 5 576 IPR045279 GO:0009736
Tpr1g3432 593 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 193 252 IPR017930 -
Tpr1g3432 593 SUPERFAMILY CheY-like 12 136 IPR011006 -
Tpr1g3432 593 MobiDBLite consensus disorder prediction 129 194 - -
Tpr1g3432 593 PIRSF RR_ARR_type-B 1 590 IPR017053 GO:0003677|GO:0003700|GO:0009736
Tpr1g3432 593 SUPERFAMILY Homeodomain-like 194 253 IPR009057 -
Tpr1g3432 593 Gene3D - 12 146 - -
Tpr1g3432 593 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 196 249 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3432 Tpr-Chr1 38642131 38645809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3432 7 593 Response Regulator Gene Family AT2G25180 41.424 1.55e-118 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Tpr1g3432 Response_reg 2.5e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3432 - K14491 mtr:MTR_1g013170 639.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3432 1 38642131 38645809 Tpr7g0685 7 6054782 6059531 PCT