Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3430 ATGGAAAGACAAAGCAAAGAAAGTACTCCTCCAAGTCCTAGCACACCATTACAATATCAACATGAAAAGAAGAAAGAACAATCTATTGATCATGAAGAAGAAGAGATCACAAAGGTAGATAATTTATTATTTGATCTAAATGAATCTACCAATGAAGATTCTATTCTTGTTTGTAATAATCAAGAAAAAGAACTCAATCTTATAACTTCTTTAGATGTTGGTAATTCATCATTAGAAAACAAAAATACTCTTGAGGTAGAACAAAGAGTTTTCTCTTGTAACTATTGTCATAGAAAGTTTTATAGTTCACAAGCGTTAGGAGGACACCAGAATGCTCATAAAAGAGAGAGATCCATAGCGAAAAGAGGACAAAGATTTGGAACACAAATAATAACTTCATCTTCTTCTTTTGGTTTTGGTTTTCCTATTATGCATAATAAACAAACCTATGCAAACATGGCTTCTTTGCCTCTTTATGGTGCTTTTGGTAATAAACCTTTAGGAATTCAAGCACACTCTATGATCCATAAACCTTCTAATGGATTTGGAAACTCTTATGGACATCATCATCATCATCATGGTTGGTCAAACTCAAGAACATTTATGGATCAACAACCTGGAATAGCGAAACTAGGCGCGGAAAATTTTCATCGAGCGACAACATCGGCAGCGGCATTATCATCATCAAGAGGAGGTGTTGGTAGATTTGAAGTGGTGGATGCAATGATGAATTCTACAGCTAATAAAGAAATGAAGCAAAAACATATTGATTTATCTCTCAAGCTATGA 789 0.3397 MERQSKESTPPSPSTPLQYQHEKKKEQSIDHEEEEITKVDNLLFDLNESTNEDSILVCNNQEKELNLITSLDVGNSSLENKNTLEVEQRVFSCNYCHRKFYSSQALGGHQNAHKRERSIAKRGQRFGTQIITSSSSFGFGFPIMHNKQTYANMASLPLYGAFGNKPLGIQAHSMIHKPSNGFGNSYGHHHHHHGWSNSRTFMDQQPGIAKLGAENFHRATTSAAALSSSRGGVGRFEVVDAMMNSTANKEMKQKHIDLSLKL* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3430 262 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 118 IPR013087 -
Tpr1g3430 262 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 262 - -
Tpr1g3430 262 Coils Coil 248 262 - -
Tpr1g3430 262 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Tpr1g3430 262 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 5 262 IPR044246 GO:0009788
Tpr1g3430 262 MobiDBLite consensus disorder prediction 1 31 - -
Tpr1g3430 262 SUPERFAMILY beta-beta-alpha zinc fingers 87 118 IPR036236 -
Tpr1g3430 262 Gene3D Classic Zinc Finger 69 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3430 Tpr-Chr1 38609696 38610897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3430 3 262 C2H2 Transcription Factor Family AT5G10970 37.931 2.61e-43 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3430 - - lja:Lj5g3v0526470.1 242.276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3430 1 38609696 38610897 Tpr7g0684 7 6050460 6051502 PCT