Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3427 ATGCCTTCACACAAGACATTCGTCATCAAGAAGAAGCTCGCGAAGAAGATGAGACAAAACAGACCCATCCCTTATTGGATTCGCATGAGAACCGACAACACCATCAGGTATAATGCTAAGCGTCGTCACTGGCGTCGTACCAAGCTTGGATTCTGA 156 0.4679 MPSHKTFVIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF* 52
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3427 51 PANTHER 60S RIBOSOMAL PROTEIN L39-2 1 51 - -
Tpr1g3427 51 SUPERFAMILY Ribosomal protein L39e 3 50 IPR023626 -
Tpr1g3427 51 ProSitePatterns Ribosomal protein L39e signature. 30 46 IPR020083 GO:0003735|GO:0005840|GO:0006412
Tpr1g3427 51 Gene3D Ribosomal protein L39e 1 51 IPR023626 -
Tpr1g3427 51 Pfam Ribosomal L39 protein 9 49 IPR000077 GO:0003735|GO:0005840|GO:0006412
Tpr1g3427 51 Hamap 50S ribosomal protein L39e [rpl39e]. 1 51 IPR000077 GO:0003735|GO:0005840|GO:0006412
Tpr1g3427 51 PANTHER RIBOSOMAL PROTEIN L39E 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3427 Tpr-Chr1 38584846 38585600 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3427 1 51 Cytoplasmic Ribosomal Protein Gene Family AT4G31985 90.196 3.24e-30 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3427 K02924 - tcc:18587895 111.309