Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3425 ATGAAAATGAAGTTTCTTCACATGATTCTCATGTTCATCCTTATTCTTCACAAACCAATTTGGATTCTTGCTTCTGATATAGACCCTCTTGTTCCCTCACCTCAAATTTCACCCTTTTCTCCAATTCTCACATCAATCACTGTTTCTGCTTCCTCTCCAGGTATTCATGTGGGGGATGAACAGCAAAAAATGGATTCACACAAGAAAAAGATAATGACTTTTGTTGTAGCTAGCACTGCACTTGGTGTCATCATTTTGTGTATGTTAAGCTTCTGGATTTATTACATCAAGTATTCATCGAAATCCAACAAGAAAAAGTTTCAAAGCTCGGATGGTGAGAAAGGGATTGGTTTAGCTCCATTTTTGAGTAAATTTAGTTCTGTGAAAATGGTTGGTAAGAAAGGGTGTGTTCCAATCATTGACTATAAGCAAATAGAAAAAGCCACTGGAAATTTCAAGGAAAGTAACATCTTGGGTGAAGGTGGTTTTGGATGTGTTTATAAGGCCAGGTTGGATGATAATTTAGATGTTGCTATCAAGAGGTTGAACTGTGAATGTCAATATGCTGAAAGAGAATTTGAGAATGAGGTGGAATTGTTAAGTAAAATTCAACATCCAAATGTAATTTCTCTGCTTGGTTGTGGCAGTAATGAGGATTCAAGGTTTATTGTCTATGAATTGATGCAAAATGGATCATTGGAAACTCAATTACATGGTCCATCTCATGGCTCAGCATTGACTTGGCATATGAGAATGAAAATTGCTCTTGACACAGCAAGAGCTTTAAAATATCTGCATGAGCACTGTTACCCTTCAGTGATCCATAGAGATCTGAAATCTTCTAATATTCTTTTAGATGCAAACTTCAATGCCAAGGTTTCTGATTTTGGTCTTGCAATAACTGATGGGTCCCAAAACAAGAATAACATCAAGCTTTCAGGCACATTGGGGTATGTAGCCCCAGAGTATCTTTTAGATGGTAAATTGACTGATAAAAGTGATGTATATGCTTTTGGAGTTGTGCTTCTTGAGCTTCTATTAGGAAGGAAGCCTGTGGAAAAACTGAACCCATCTCAATGCCAATCTATTGTCACATGGGCCATGCCACAGCTCACAGACAGATCAAAGCTTCCAAACATTGTGGATAATGTGATTAAGAATACAATGGATCCTAAGCACTTATTCCAGGTTGCTGCTGTGGCAGTGTTATGTGTGCAACCAGAGCCATGTTACCGCCCTCTGATTGCAGATGTTCTACACTCCCTCATCCCTCTTGTACCTGTTGAGCTAGGAGGAACTCTCAGAGTTTCACAAGTGACGCAGCAACCTACAAATTCTAGTTAA 1344 0.3862 MKMKFLHMILMFILILHKPIWILASDIDPLVPSPQISPFSPILTSITVSASSPGIHVGDEQQKMDSHKKKIMTFVVASTALGVIILCMLSFWIYYIKYSSKSNKKKFQSSDGEKGIGLAPFLSKFSSVKMVGKKGCVPIIDYKQIEKATGNFKESNILGEGGFGCVYKARLDDNLDVAIKRLNCECQYAEREFENEVELLSKIQHPNVISLLGCGSNEDSRFIVYELMQNGSLETQLHGPSHGSALTWHMRMKIALDTARALKYLHEHCYPSVIHRDLKSSNILLDANFNAKVSDFGLAITDGSQNKNNIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELLLGRKPVEKLNPSQCQSIVTWAMPQLTDRSKLPNIVDNVIKNTMDPKHLFQVAAVAVLCVQPEPCYRPLIADVLHSLIPLVPVELGGTLRVSQVTQQPTNSS* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3425 447 ProSiteProfiles Protein kinase domain profile. 152 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3425 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672|GO:0006468
Tpr1g3425 447 Gene3D Transferase(Phosphotransferase) domain 1 228 427 - -
Tpr1g3425 447 PANTHER OS01G0750732 PROTEIN 40 443 - -
Tpr1g3425 447 SMART serkin_6 152 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3425 447 SUPERFAMILY Protein kinase-like (PK-like) 133 422 IPR011009 -
Tpr1g3425 447 Gene3D Phosphorylase Kinase; domain 1 121 227 - -
Tpr1g3425 447 ProSitePatterns Protein kinases ATP-binding region signature. 158 180 IPR017441 GO:0005524
Tpr1g3425 447 Pfam Protein tyrosine and serine/threonine kinase 155 390 IPR001245 GO:0004672|GO:0006468
Tpr1g3425 447 CDD STKc_IRAK 158 425 - -
Tpr1g3425 447 PANTHER BNAA04G14780D PROTEIN 40 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3425 Tpr-Chr1 38568962 38573743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3425 22 368 Receptor kinase-like Gene Family AT1G80640 46.023 2.57e-97 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Tpr1g3425 PK_Tyr_Ser-Thr 2.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3425 - - gmx:100812044 706.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3425 1 38568962 38573743 Tpr7g0674 7 5929324 5941877 PCT