Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3422 ATGGCTTACCATAATCAACATCTTTCACAAGAACTACCACCAATCCACCATTTCACAGACCAAACAAATAACAACAACAACACGTTCCGTTCCATATTACCAGACTCACCCGACCCTAACTCCAAACCTGATTCCGACCCTAACCAACTCCAAACCACACCTAATTGGCTCAATAACGCTCTTCTTCGTAACCACTACACCGACAACAACAATAACGACGTCACTAACGACGTTAACAACGACAACAACGTTAACGGTAACGGTGCTTCCAATTTTCTTAATCTCCAAACGGCTACCGACTCCGCCGCAGTTCAAAACTCCGGTCAATGGCTTTCCCGGTCAATTCTCCACCGTCATCACGGTGAAGTCATCGACGATGTCTCCGTCTCCGTCGGCGTCGGCGGCGGGGACGAATTAGGTGATATGAAAGGTGAAGGTATCGGCGGGAAGGGAGAGACGGTGGTCGGAGATGGCGGAGGAGGGTTAGTGAACTGGCAGATGGGGAGGTGGAAGGCGGAGATTATGGCGCATCCGTTGTATGAACAATTGTTGTCGGCACACGTGGCGTGTTTGAGAATTGCAACGCCGGTGGATCAGTTACCGAGAATTGATGCTCAGTTGGCACAGTCACAGAATGTGGTTGCCAAGTATTCGGCGTTTGGACAGAACATCGTCGGAGTAGATGACAAAGAACTTGACCACTTCATGTCACACTATGTTTTATTGCTGTGCTCTTTCAAAGAACAATTGCAACAACATGTTCGCGTCCACGCAATGGAAGCAGTCATGGCTTGTTGGGAGATTGAGCAATCCTTACAAAGTCTAACAGGAGTTTCACCTGGAGAAGGTACGGGGGCAACAATGTCCGAAGACGAAGATGAACAAGTAGACAGTGATGCAAATATATTTGATGGTAGTTTCGATGGCGGTGCAGATAACATGGGATTTGGTCCTCTTGTACCAACAGAAAATGAAAGATCTTTAATGGAGCGCGTAAGACAAGAGCTAAAGCATGAATTGAAACATGGTTATAAGGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCTGGCGACACTACCTCTGTCCTTAAGGCATGGTGGCAATCACATTCCAAGTGGCCTTATCCTACGGAGGAAGATAAAGCAAGGTTGGTGCAAGAAACTGGTTTGCAATTAAAGCAGATTAATAACTGGTTTATCAATCAAAGGAAGAGGAATTGGCACAGCAATCCTTCATCTTCAACTGTCTTGAAGAGCAAGCGCAAAAGGTCTCAAAACTAG 1308 0.4625 MAYHNQHLSQELPPIHHFTDQTNNNNNTFRSILPDSPDPNSKPDSDPNQLQTTPNWLNNALLRNHYTDNNNNDVTNDVNNDNNVNGNGASNFLNLQTATDSAAVQNSGQWLSRSILHRHHGEVIDDVSVSVGVGGGDELGDMKGEGIGGKGETVVGDGGGGLVNWQMGRWKAEIMAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSAFGQNIVGVDDKELDHFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSEDEDEQVDSDANIFDGSFDGGADNMGFGPLVPTENERSLMERVRQELKHELKHGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTVLKSKRKRSQN* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3422 435 SMART KNOX1_2 168 212 IPR005540 GO:0003677|GO:0005634
Tpr1g3422 435 SMART KNOX2_2 221 277 IPR005541 GO:0003677|GO:0005634
Tpr1g3422 435 Pfam ELK domain 335 356 IPR005539 GO:0003677
Tpr1g3422 435 CDD homeodomain 358 419 IPR001356 GO:0003677
Tpr1g3422 435 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 41 433 - -
Tpr1g3422 435 Pfam KNOX1 domain 171 211 IPR005540 GO:0003677|GO:0005634
Tpr1g3422 435 SMART HOX_1 357 422 IPR001356 GO:0003677
Tpr1g3422 435 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 41 433 - -
Tpr1g3422 435 Pfam Homeobox KN domain 375 414 IPR008422 GO:0003677|GO:0006355
Tpr1g3422 435 ProSiteProfiles ELK domain profile. 335 355 IPR005539 GO:0003677
Tpr1g3422 435 Pfam KNOX2 domain 228 276 IPR005541 GO:0003677|GO:0005634
Tpr1g3422 435 Gene3D - 354 428 - -
Tpr1g3422 435 ProSiteProfiles 'Homeobox' domain profile. 355 418 IPR001356 GO:0003677
Tpr1g3422 435 SMART ELK_2 335 356 IPR005539 GO:0003677
Tpr1g3422 435 SUPERFAMILY Homeodomain-like 357 421 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3422 Tpr-Chr1 38520375 38524714 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3422 1 432 Homeobox Transcription Factor Family AT5G25220 65.801 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Tpr1g3422 KNOX2 1.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3422 - - cam:101494477 667.537