Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3417 ATGGGAAAACCAGCTGGAAAAAAGAAGGAACATCATGAATCACCAAAATCAAAGAACAACAAAGGTGGTGGTGGTGGTGGTTACGAACGTTCATCATCATCAAAAGCATTAGACGATGATACAGCGATGTTTATCAACATGTCACAAGAGTTAAGAGAAGAAGGTAACAAACTTTTTTACCAGAAAAAAGACAATGAAGGTGCTATGTTAAAGTACGAAAAAGCCCTTAAACTTCTTCCTAAAAATCATATTGATGTTGCACATCTTCATACAAATATGGCTATGTGTTATATGCAATTGGGTCTTGGTGAGTACCCTAGAGCAATCAATGAGTGCAATCTTGCTTTACAGGTTTCGCCGAGGTATAGTAAAGCTCTTTTGAAAAGAGCTAAGTGTTATGAATCCTTGAATCGGTTAGATTTGGCTATGAGAGATGTTAGGGTTGTTTTGAATGCTGAACCCAATAATTTGACCGCGTTGGAGATTCTTGATAGTTTGAGGATTACTATGGATGAGAAAGGGATTACGATCGATGAGACTGAGATTGCTTTGGCTGCTTTGCAGCAGGTGGAGGCACCTGCTGCAAGGTTTAGGAAAGTTGTTAGGGAGAAGATTACTAAGAAGAAGAAAGGACATAAAGGGGAAGGCGAGGAAGAGCGGAAAAGTAAGAATGTTGTTGATGAGAAGAAAAACAATGTTGGGAATGTTAATGTGAAGGGTAAAGATTCTAAGGATAAGGATAGTAGAGAAGTTGTTAAGGAAGATAAAACGGTTACTAGGACTGTGAAGTTGATATACGGAGAGGATATTAGGTGGGCGCAGTTACCTGTGAATTGTAGTATGAAGTTGGTGAGGGATGTGATAAGGGATAAGTTTCCGGGGTTGAAGGGTGTTCTTGTGAAGTATAAGGATAGGGAAGGTGATTTGGTTACTATTACTACTACTTCTGAGTTGAGGTTAGCTGAGGGTTGTCATGTGCTTGGTTCGATTCGGTTGTATATTACGCAGGTGGATTTGGATAAGGAGCCACGTTATGATGAAAAGCCAAGCAGTGGTGAGGTCAGAAGGGAGAATGGGGTTGGAGACCGGAATAATAAGATGCTTACTGTGGAGGATTGGCTTGTTCAGTTTGCGAGGCTGTTTAAGAACCATGTTGGGTTTGATTCTGATTCGTATCTGGATATTCATGAGGTTGGGATGAAGCTATATTCGGAGGCGATGGAGGATGCGGTGACGAGTGATGGTGCTCAAGAGCTGTTTGATATTGCTGCAGATAAGTTTCAAGAGATGGCTGCTTTGGCTTTGTTTAATTGGGGAAATGTTCACCTGTCTAAGGCAAGGAGGCAAGTGCCTTGTCAGGAGGAAGGGTCGACAGATGCTTCTTTCGAGCATGTTAAAGCTGCATATGAGTGGGCTAAGAAGGAGTACAAGGAAGCGGAAATGAGATACGAAGAATCTGTGAAAATCAAACCAGACTTTTATGAGGGACTCCTTGCTCTTGGGTATCAGCAGTTTGAGCAAGCAAAGCTATGCTGGGGTTATTTACTTGCAAACAATAAGGAGTTCGAAGTTGGCCCTTTTGAGGAGGTTCTACAGCTCTATAACAAGGCAGAGGACGGCATGGAGAAAGGGATGTTGATGTGGGAGGAGCTTGAGGAACAGCGGTTGAATGGACTATCTAAATTAGATAAATATAATTCACAGTTACAGAAAATGGGTTTGCACGGTCTTTTCAGGGATGTTTCTTCCGAGGAAGCTGAAGAGCAGGCTTCAAAGATGAGGATACAGATATATCTTTTATGGGGTACCTTATTGTACGAGCGTTCTGTTGTGGAGTTCAAGCTAGGATTACCAACATGGGAGGAATGTTTGGAGGTTGCAGTTGAAAAATTTGAACTAGCTGGAGCTTCTACAACTGACATTGGTGTTATGATAAAGAACCATTGTTCTAATGAAACAGCAATGGAAGGGTTCAAAATTGATGACATAGTGCAAGCATGGAATGAGATGTATGATGGGTGGCAGTTTGATGCTCCAACTTTCCGACTTGAACCATTGTTTCGTCGGCGTGTTCCAAGACTCAATTACATCTTGGAGCAATTTTAA 2106 0.4164 MGKPAGKKKEHHESPKSKNNKGGGGGGYERSSSSKALDDDTAMFINMSQELREEGNKLFYQKKDNEGAMLKYEKALKLLPKNHIDVAHLHTNMAMCYMQLGLGEYPRAINECNLALQVSPRYSKALLKRAKCYESLNRLDLAMRDVRVVLNAEPNNLTALEILDSLRITMDEKGITIDETEIALAALQQVEAPAARFRKVVREKITKKKKGHKGEGEEERKSKNVVDEKKNNVGNVNVKGKDSKDKDSREVVKEDKTVTRTVKLIYGEDIRWAQLPVNCSMKLVRDVIRDKFPGLKGVLVKYKDREGDLVTITTTSELRLAEGCHVLGSIRLYITQVDLDKEPRYDEKPSSGEVRRENGVGDRNNKMLTVEDWLVQFARLFKNHVGFDSDSYLDIHEVGMKLYSEAMEDAVTSDGAQELFDIAADKFQEMAALALFNWGNVHLSKARRQVPCQEEGSTDASFEHVKAAYEWAKKEYKEAEMRYEESVKIKPDFYEGLLALGYQQFEQAKLCWGYLLANNKEFEVGPFEEVLQLYNKAEDGMEKGMLMWEELEEQRLNGLSKLDKYNSQLQKMGLHGLFRDVSSEEAEEQASKMRIQIYLLWGTLLYERSVVEFKLGLPTWEECLEVAVEKFELAGASTTDIGVMIKNHCSNETAMEGFKIDDIVQAWNEMYDGWQFDAPTFRLEPLFRRRVPRLNYILEQF* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3417 701 CDD PB1 261 334 - -
Tpr1g3417 701 SUPERFAMILY CAD & PB1 domains 255 342 - -
Tpr1g3417 701 ProSiteProfiles PB1 domain profile. 259 337 IPR000270 GO:0005515
Tpr1g3417 701 SMART PB1_new 259 337 IPR000270 GO:0005515
Tpr1g3417 701 MobiDBLite consensus disorder prediction 1 18 - -
Tpr1g3417 701 SMART tpr_5 87 122 IPR019734 GO:0005515
Tpr1g3417 701 SMART tpr_5 460 493 IPR019734 GO:0005515
Tpr1g3417 701 SMART tpr_5 48 82 IPR019734 GO:0005515
Tpr1g3417 701 SMART tpr_5 123 156 IPR019734 GO:0005515
Tpr1g3417 701 MobiDBLite consensus disorder prediction 210 228 - -
Tpr1g3417 701 Pfam PB1 domain 259 335 IPR000270 GO:0005515
Tpr1g3417 701 SUPERFAMILY TPR-like 47 168 IPR011990 GO:0005515
Tpr1g3417 701 MobiDBLite consensus disorder prediction 1 36 - -
Tpr1g3417 701 Gene3D Tetratricopeptide repeat domain 46 172 IPR011990 GO:0005515
Tpr1g3417 701 Gene3D - 252 336 - -
Tpr1g3417 701 MobiDBLite consensus disorder prediction 208 251 - -
Tpr1g3417 701 PANTHER PROTEIN CLMP1 1 700 IPR044517 -
Tpr1g3417 701 PANTHER PROTEIN PHOX4 1 700 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3417 Tpr-Chr1 38461293 38465994 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3417 38 156 Calmodulin-binding Proteins AT3G25230 31.250 7.96e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3417 - - vra:106765155 978.778