LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr1g3411	ATGGAGGATGCCCCAGCTGATTTGAGACCTAACAACATTGCTGAACCAGTTGTTGATTCTCTTGATTTTGCTAAAAACTTTGCTACTGATGATAAATTTAGTACTCGAGATGACTTGTTGAAATGGGTTCGAGGTGAAGCACTCAAGTTAGGGTTTGCTATTATTATTGCAAAATCAGATAATGGATCAGATACAAGAAAACAAACACTTGTACTTGGATGTGAAAGGGGTGGTGTATATAGAAAACGCCAGAAGAAACTGAAAGGCCAAGACAGAAGAACCATAAAATGTGAGTGTCCTTTCAGATTGCGGGGTTATTTTTTGAGCTCCGGTGTTTGGAAAATTACTGTAGTGTGTGGAAAACACAATCATGAGATGAAAAAAGATTTAGAAGGTCATCCTATTGCACGTCGTCTAAATATCGAAGACATAAAACTTGTTCAAGAGATGACAAGTAACAGGGTCCAACCAAAAAATATTCTTATGACTTTAAAAAAAAGAAGGTATGACAATGTGGCTAATATCAAACATATTTATAATGTGCGTCACAGATATAACAAGTCTATAAAGGGAGAAATGCAACATCTGATGGATCTTTTGGTTGAAGGCGATGATGTCCCAAATGAAGGTCATCCAGATATATCTCTTACGGAAGAGTGGGAAGCGATCCAGGTTCGGTTTAACAATGCTGATTACAATACGAAGATACATATGAAGGAGCAGCTGCGTCAAATAGCATTTCCAGAAACGACATCACTGTGTCCACCTGCTGAGAAGGAAAATGAGAACTTACCTTTCTCATTTGTGACTTAA	813	0.3776	MEDAPADLRPNNIAEPVVDSLDFAKNFATDDKFSTRDDLLKWVRGEALKLGFAIIIAKSDNGSDTRKQTLVLGCERGGVYRKRQKKLKGQDRRTIKCECPFRLRGYFLSSGVWKITVVCGKHNHEMKKDLEGHPIARRLNIEDIKLVQEMTSNRVQPKNILMTLKKRRYDNVANIKHIYNVRHRYNKSIKGEMQHLMDLLVEGDDVPNEGHPDISLTEEWEAIQVRFNNADYNTKIHMKEQLRQIAFPETTSLCPPAEKENENLPFSFVT*	271

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr1g3411	270	PANTHER	MALONATE-SEMIALDEHYDE DEHYDROGENASE	32	185	IPR010061	GO:0004491
	Tpr1g3411	270	PANTHER	METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE [ACYLATING], MITOCHONDRIAL-LIKE ISOFORM X1	32	185	-	-
	Tpr1g3411	270	Pfam	FAR1 DNA-binding domain	47	127	IPR004330	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr1g3411	Tpr-Chr1	38409854	38413839	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Tpr1g3411		FAR1	2e-08	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr1g3411	-		-	mtr:MTR_1g012760	332.028