Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3404 TTTGACCACATTTATCTTATTGCAGAACTCTTAGAATTAAAAACAGGTTATTATAGTTTGAGACAAATTAAAGCTGCTACTAATAACTTTGATCCAGAAAGTAAGATAGGCGAAGGAGGATTTGGTCCTGTTTACAAGGGTTTACTGTCAGATGGTGCTGTCATTGCTGTTAAACAGCTCTCTTCCAAATCAAAGCAAGGAAACCGTGAATTCGTTAATGAAATAGGTATGATATCGTCTTTGCAACATCTGAATCTTGTGAAGCTTTATGGATGTTGCATTGAAGGAAACCAATTGCTGCTTGTATATGAGTACATGGAGAACAATAGTCTTGCTCGCGCTCTTTTCAGTAAACCGGAACAGAAGTTGAACTTGGACTGGAGCACGAGAATGAAGATATGTGTCAGGATAGCAAGAGGTTTAGCTTATCTTCATGAAGAATCAAGGTTGAAAATAGTTCACAGGGATATTAAGGCGACCAATGTCTTACTTGATAAGAATCTGAATGCAAAGATCTTTGATTTCGGTTTAGCCAAGCTTGATGAAGAAGAAAATACTCATATCATGCGAATAGCAGGGACAATAGGTTAA 591 0.3723 FDHIYLIAELLELKTGYYSLRQIKAATNNFDPESKIGEGGFGPVYKGLLSDGAVIAVKQLSSKSKQGNREFVNEIGMISSLQHLNLVKLYGCCIEGNQLLLVYEYMENNSLARALFSKPEQKLNLDWSTRMKICVRIARGLAYLHEESRLKIVHRDIKATNVLLDKNLNAKIFDFGLAKLDEEENTHIMRIAGTIG* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3404 196 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 9 194 - -
Tpr1g3404 196 ProSiteProfiles Protein kinase domain profile. 30 196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3404 196 Gene3D Phosphorylase Kinase; domain 1 5 105 - -
Tpr1g3404 196 Gene3D Transferase(Phosphotransferase) domain 1 106 196 - -
Tpr1g3404 196 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Tpr1g3404 196 SMART serkin_6 30 191 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3404 196 Pfam Protein tyrosine and serine/threonine kinase 33 186 IPR001245 GO:0004672|GO:0006468
Tpr1g3404 196 SUPERFAMILY Protein kinase-like (PK-like) 15 195 IPR011009 -
Tpr1g3404 196 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 9 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3404 Tpr-Chr1 38360762 38363387 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3404 11 196 Receptor kinase-like Gene Family AT1G53440 81.818 8.71e-103 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tpr1g3404 PK_Tyr_Ser-Thr 8.6e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3404 - - gmx:100817368 332.413