Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3395 ATGGTACAAAGTAACAAGTTTAGAGGAGTTAGACAGCGCCAGTGGGGCTCTTGGGTCTCAGAAATTCGTCACCCATTACTGAAGAGAAGGGTATGGCTAGGTACATTTGAGACAGCAGAGGCAGCAGCAAGAGCATATGATGAAGCAGCCATTTTAATGAATGGCAAAAATGCCAAAACCAATTTCCCTATACCAAAAGATATTCAAACACAAGAAGCCAATTTCCTCTCTTCAAATGCTCTTTCTGATATCCTCAATAAAAAACTTAGAAAGTGTTGCAAAAAACAATCTCCATCACTCACTTGTTTGAGGCTTGATACTGACAATTCTCACATAGGAGTGTGGCAAAAAGGAGCAGGACCACATTCTGATTCTAATTGGATCATAAGGGTGGAGCTTGGAAAAAAATTACATCAAGAGGGTCATGATGAATCAAATTATGTGACATCATTAGCAGAATCGGTACCTAATAATAGTACTATTGATGATGATGATGATGCTGAGAAAAATGGGATAGATCATGAAGAGGATATTGTTACCATGCAGATGATTGAAGAGCTACTTAATTGA 570 0.3842 MVQSNKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDEAAILMNGKNAKTNFPIPKDIQTQEANFLSSNALSDILNKKLRKCCKKQSPSLTCLRLDTDNSHIGVWQKGAGPHSDSNWIIRVELGKKLHQEGHDESNYVTSLAESVPNNSTIDDDDDAEKNGIDHEEDIVTMQMIEELLN* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3395 189 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Tpr1g3395 189 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Tpr1g3395 189 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Tpr1g3395 189 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 189 - -
Tpr1g3395 189 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Tpr1g3395 189 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Tpr1g3395 189 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 189 - -
Tpr1g3395 189 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700|GO:0006355
Tpr1g3395 189 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Tpr1g3395 189 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3395 Tpr-Chr1 38281961 38282895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3395 1 189 AP2-EREBP Transcription Factor Family AT5G25390 56.566 3.83e-69 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr1g3395 AP2 2.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3395 - - lang:109326202 236.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3395 1 38281961 38282895 Tpr1g3395 1 38281961 38282895 ECH
Tpr7g0635 7 5607487 5608625 Tpr1g3395 1 38281961 38282895 ECH
Tpr4g3665 4 42590602 42592477 Tpr1g3395 1 38281961 38282895 ECH