Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3385 ATGGATTCTCCAGAACCTTCTAAGATCAACAACAACAACAACACTTCTTCTTCTTATTCTTCTCTCTCCACTCTCAATGCCGCCGCTGAATCTCCTCAAGTTCAAGAATCTCCCTTTTTGAGATTTGTCAACACTCTATCTCCAATAAAGCCCGTCAAGGCTTCTCACGCGACACATGGGTTTCTCGGACTCAATTCTCCACCTCTTGTATTCAAGTCGCCGCGTATTAGTGATCACCACCGTGAAAAACAATACTTGGAAAGGCCTCAAGGTAGCAATTTGTCCAGTGGGGAAATATCTCAAAGTGACATCGGAGACAACAGTCTTGGTGAAGCTCGTGGTGATTTGAAGAAATTGACTTCTCAGCAGTCATTGCCAGAGGGGTTTATAACAGATGCCCAGAAGGAATTTGGCGTCAAGAACGATGCGAATAACGAAAGCTGTAGTCCTCCACAATCTGTTGAGGAATATTTGGCTGATCCCGGGGAGGATCAATTGTTTCCAGTCAACCCAGAAACGGAACAATCTACTGATGCGGTTGGGTCATCCTTAACTGAGACAGAGAGAGTTATATTAAAATTTGATAGGAGTGATGGTCCTAGTAACAGAGCAGAAGAACTTTTGCCTCTGTTGGAGGAATCTAATATGGTTCATCAAGAAAGGCAAGCATATGTTGAAAATAATTCAATAGTAGAAGGGGAGAAAAATGGTGCTGAATTAGTTTCTCAAGAGCACGTAAACTTAGGCTCGAGTTCAGGTGCAGATGCTTTTGATAAACAATATTGCAATGATTCACTTCCCCAGTGTGTAGGAAATGATCAACGACATCAGAGTGACTGTAAACCTCAATTGATGCCTGATCCTATCCAGGATGTTAAAGAATTCGAAAATTCCAATGAGATGGTGTCAACATCACAAGTAAATTCAGAGAATATCCCACAAGATGGCTCTGAGGCTAGTCTAAAGTATCATGGCTTCCGTAGACGCTGCCTACAATTTGATGAAGCTGCTTCTATTGTTCTTGGAAGTAACAAGTTTCATGTGAAAATGAATGCAACTTCAAGCAACGTGAAAATAGTTCCTGTGGCAGGTTCAAAGCCACCAGGCATTGGGTTGCATTTAAATAGCATTGTAAATGCAATGCCGCCTAGTCGTGCTTCAATTTCAGGTGTGAGATTATCAGATGGTTTACAGGGGATACAATCCAAACCTTCTATAAGTCTGCATAAAGTGGAAAGTGTGACAAGATCCTCGGTTCCGTCCAATATGGATGGTCAATCGTTTATTGATACTAGAAATGAGAGCCATGAAACTGATGCTTCAGTAGTTGCAGATTCTTTCATTTCTGAGTCTCCTATCTTGAAAGAATCCATCGACCTATATCCGGCAAATACAAATGATAAGAAGAGAGTTAGCCCTACAGAAGTTGAAAATACTGAGGAATCAAACCATCGTAGCACCTCCAGGAAAAAGAAGAAAACAAGTGCTGATGATGCCAGTGGCCCTAAGAGTTGCAACTGTAAGAAGAGTAAATGTTTGAAACTTTATTGTGATTGTTTTGGTGCTGGACTCTTCTGTGGCGAGGATTGTGCTTGTGAAAGCTGTGGTAACAGAGTAGAATTTCAGGAGACAGTTGTTGAGACAAAGCATCACATTGAATCTCGTAATCCACAGGCATTTGCTCCCAAGATTGTACTGTGTGCGGCCGATGTTCCACCAAATAATATGGAAGATGTGAATATGACAACACCGGCATCGGCAAGGCACAAAAGAGGTTGCAATTGCAAAAAGTCAAAGTGTACTAAAAAATATTGTGAATGTTTTCAGGCTAACGTTGGATGCTCGACTGGATGCCGATGTGATGGATGTATGAATGCTTTTGGCAAGAGAGAAGATTTTGTGGCAATGGAACATGCTTTGAGCAAAGAGAGGGAGAGTAGCATTGTTGAAGAAGGGTTCGATGACACACTTCACAATAAACAGAAAATGGTGACAGTTAGGACAGGCTTGTTTCGACCAGTAAATCACCTCTCACCTGTAACACCATTGTTGGAATGCTCTGACCAAGGCAAGCAGGCTGCAAAGTCCAGAGTTCCTTCTGCAAGTTGGACTAAATCTTCCAAAAAATCACGGAGCAGTCTTGCACATTCGGAGTCGAATAATTCTCAAAAGAATGCACCTACAGGTCCTTCACCTAAAGATAATGAGTGGTTAGATCTTCCACCATACCAACTCTCCAATAGATGCGGTATTCGCCAATTGTCCGGGGGTTCTCTTCGTTGGCGCGGTAGTTCACCAATTACCCCAAATGATTCCAAAGATGATGAATCAGACGACAAGCTCTTTGACATTCTAGAAGATGGAACACCTGATGTATTAAAGGAAGCTTCAACTCCCATCAAGTCTGTGAAAGCAAATTCTCCGATCCAAAAGAGAGTTTCTCCTCCACAGAATCATATACTTCGGATTGGATCAAGCTCCTCAGTTGGTGGTTTGAAAAGTGGCAGGAAATTTATATTGCAATCTGTTCCTTCTTTTCCGCCGTTGACTCCTTGTGCTGATTCCAAAGCTATTCGCACTGCCAATGAGGATTCGGGCAACAGCACAGATAAAGTGACATAA 2622 0.4218 MDSPEPSKINNNNNTSSSYSSLSTLNAAAESPQVQESPFLRFVNTLSPIKPVKASHATHGFLGLNSPPLVFKSPRISDHHREKQYLERPQGSNLSSGEISQSDIGDNSLGEARGDLKKLTSQQSLPEGFITDAQKEFGVKNDANNESCSPPQSVEEYLADPGEDQLFPVNPETEQSTDAVGSSLTETERVILKFDRSDGPSNRAEELLPLLEESNMVHQERQAYVENNSIVEGEKNGAELVSQEHVNLGSSSGADAFDKQYCNDSLPQCVGNDQRHQSDCKPQLMPDPIQDVKEFENSNEMVSTSQVNSENIPQDGSEASLKYHGFRRRCLQFDEAASIVLGSNKFHVKMNATSSNVKIVPVAGSKPPGIGLHLNSIVNAMPPSRASISGVRLSDGLQGIQSKPSISLHKVESVTRSSVPSNMDGQSFIDTRNESHETDASVVADSFISESPILKESIDLYPANTNDKKRVSPTEVENTEESNHRSTSRKKKKTSADDASGPKSCNCKKSKCLKLYCDCFGAGLFCGEDCACESCGNRVEFQETVVETKHHIESRNPQAFAPKIVLCAADVPPNNMEDVNMTTPASARHKRGCNCKKSKCTKKYCECFQANVGCSTGCRCDGCMNAFGKREDFVAMEHALSKERESSIVEEGFDDTLHNKQKMVTVRTGLFRPVNHLSPVTPLLECSDQGKQAAKSRVPSASWTKSSKKSRSSLAHSESNNSQKNAPTGPSPKDNEWLDLPPYQLSNRCGIRQLSGGSLRWRGSSPITPNDSKDDESDDKLFDILEDGTPDVLKEASTPIKSVKANSPIQKRVSPPQNHILRIGSSSSVGGLKSGRKFILQSVPSFPPLTPCADSKAIRTANEDSGNSTDKVT* 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3385 873 SMART CXC_2 500 541 IPR033467 -
Tpr1g3385 873 SMART CXC_2 588 629 IPR033467 -
Tpr1g3385 873 MobiDBLite consensus disorder prediction 803 826 - -
Tpr1g3385 873 MobiDBLite consensus disorder prediction 693 730 - -
Tpr1g3385 873 MobiDBLite consensus disorder prediction 464 495 - -
Tpr1g3385 873 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 591 626 IPR005172 -
Tpr1g3385 873 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 503 538 IPR005172 -
Tpr1g3385 873 MobiDBLite consensus disorder prediction 1 37 - -
Tpr1g3385 873 ProSiteProfiles CRC domain profile. 501 628 IPR005172 -
Tpr1g3385 873 MobiDBLite consensus disorder prediction 854 873 - -
Tpr1g3385 873 MobiDBLite consensus disorder prediction 470 495 - -
Tpr1g3385 873 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 858 IPR044522 GO:0003700
Tpr1g3385 873 MobiDBLite consensus disorder prediction 688 735 - -
Tpr1g3385 873 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 4 1 858 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3385 Tpr-Chr1 38217357 38223459 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3385 312 851 CPP Transcription Factor Family AT3G22780 32.916 1.18e-59 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Tpr1g3385 TCR 6.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3385 K21776 - gmx:547664 746.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3385 1 38217357 38223459 Tpr1g3385 1 38217357 38223459 ECH
Tpr1g3385 1 38217357 38223459 Tpr3g3052 3 33037998 33040627 PCT