Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3380 ATGGATATTGGATTAAAGTCTCATAGTCATAATAACAAAAACAATGACGGTAAAAATCAACTCCTCAAAGATGATGTTGGCAGCCAATACAGTCTTACCGGTATCATTCTTCCATCTCTCGGCGCCGAAACCACCGCCCGTACCGACCTCCCACGTGGCATCATCTCCCCTTACAACCGTACTTATCAGCAATGGTGCAGGTTTCTGATGATATGGGTTTTCTACACTGCATGGGTGTGTCCTTTTGAATTTGGGTTTCTTAAGACATCAAAGGGTCGACTCACTTATGTAGACAGCATTGTGAATGCACTTTTTTTTATTGACATTGTTCTTACCTTCTTTGTTGCCTATCTTGACGAAACTACTTTTCTACTCGTCGGTGATCAAAAGAAAATTGCAAAGAGATATTTGAAATGCTGGTTTTTCTTTGATTTGGCCTCTATCATTCCTTATGAAATGTTTAGGAAAGACTTGCCAACAACGGTCCAGACGTATGGTTACTTCAATATTCTTCGCCTTTGGCGCCTTCATAGAGCCGGTGCTATGTTTTCGAGGTTAGAAAAGGACAGGACTTATAACTATTTTTGGGTGCGATGTTTAAAACTTTCATGTGTAACGATATTTTCAGCACATGTAGCAGCGTGCGTTTTCTATTTTCTTGGTACAGAACACAACAACCGTAAAAAAGTTACATGGTTATCACTTGTTTCAAATGGTGCCGAACTAAGTATGTGGGATGGTTATGTATCATCAGTATATATGTCCGTAGTGACTCTTTCTGCAGTTGGTTATGGAGATTTGCATTCTGTTAGTACAGATGAACAGGTTTTTTGCATTTTTTATGTGATATTCAATTTTGGACTTTCTGCATATCTTATAGGAAACATGACCAATTTGGTTGTTCATTGGACGCAAAGAACTAAGAGATATAGAGATACTGTCCAAGCTGCGTCAAATTTTGCTCATAGGAATCAGTTACCTCAACGTTTGCAAGATCAGATTTTTTCTCATTTTCGTATGAAGTACAAAATAGATTTAGAAGGACTCGAGCAACAAGAAATAATTTGTTCCCTTCCGAAAGCCATTCAGTCAAGCATCGCATATCATCGGTTTTTTAATGTTATCAAAGAAGTATACTTGTTTAAGGGAGTGTCAAGTGACCTACTATTTCAACTGGTCACACAGTTGAATGCTGAGTTTTTTCCTCCAAGAGAAGATGTAATCTTGCAGAATGAATCACCAACAGACTTTTATATATTGTCTATTGGATCTGTTGAACTTATCCTTCAAGAGAACGGAATAGAACGGGCTTTTCGTGAAGTAAAGCAATTTGAAGTTTTTGGAGAAATAGGAGTGCTATGTTACAGGCCACAACTTTATACAGCTCGGACCAGGCTATTAAGCCAGATCTTGCGTTTGAGTCGAACATCATTTCTAAACCTTGTTCATAACAATGTTGAAGACGGAACAATTATCATGAACAATTTTCTCCAGCATGTGCACAATTTAAGTTTAACGTACCCAGCCATGGTAGGGTTTATGTCTGAAGTAGAGACATTGTTGTCAACAGGCAAAATGGATTTGCCTATAAGTTTAGTATTCGCAGCTGAAAAAGATGATGATATGCTGTTGCATCAATTGCTGAAAAAAGGCTCAGATCCAAATGAAATAGATCACAAAAATGGAAAGACACCACTGCATGTTGCAGCTTTTAAAGGCAGTGATCATTGTGTGGTTTTGCTTCTAGAATTTGGAGCTGATACCAACATACAAGACTTTGAAGGAAATATATCACTATGTGAAGCAATGAAAGGAGGGCATGAATTAGTGAAAAAACTACTTATAGACAATGGTGCAGATATATCTTCCGCTAACGTGACTCCTTTAGCAATCTTCGCTATCGAGAAAAATGACATTCAATTACTAAAAGATATTATGAAACTTGGTGGTGATATTGTGACAAACTTTACAAAAGAAGGAACCACTGCACTTCATGCTGCTGTATGTGAAGGAAATGTTCAAATAGTTAAGTTTCTTGTAGAACACGGAGCAGATATCGATAAGCATGATAAAGCTGGTTGGACTCCAAGAAATTTAGCAGATCATCAATGCCATGAAGAGATACAAAATATGTTTAAAGAAATTCCACATGTTATTCCTCAGATGCCAAATAATAATGGAGGGTCAAATATTCCAAAGTCTTACAGTGAACCTTCTATGCTAGCTATGTCTCGAGGTGGTAGCTTTCGACCTAATCAAGATTCGACATGTTTGAATGGTCATCAAAAAAGAAGGGTTGGCTCTTCTAGGAATTCCTTTTTTGGAATGGTTACATCTGCTAAACGAGATAAATCTGGTATTTCTGCATCTCAAGACGGTCAAACTACAACTTCTACACGTGCACACGAATTGCCGATTAGAGTAATTCTTAGTCGCCAAGAAAAAAGTGAACAACCTAAAAGGCTTGTTTTTCTACCACAGTCCCTTCCAGAGTTGCTAGATATTGGTGCTCAAAAGCTTGGCTTCTCTCCCTCTAAAGTTTTGACCGAAGATGGAGCTGAAATTGAAGACATTAACTTGATTAGAGAGGGTGATCATCTTATTCTTGTATGA 2613 0.3785 MDIGLKSHSHNNKNNDGKNQLLKDDVGSQYSLTGIILPSLGAETTARTDLPRGIISPYNRTYQQWCRFLMIWVFYTAWVCPFEFGFLKTSKGRLTYVDSIVNALFFIDIVLTFFVAYLDETTFLLVGDQKKIAKRYLKCWFFFDLASIIPYEMFRKDLPTTVQTYGYFNILRLWRLHRAGAMFSRLEKDRTYNYFWVRCLKLSCVTIFSAHVAACVFYFLGTEHNNRKKVTWLSLVSNGAELSMWDGYVSSVYMSVVTLSAVGYGDLHSVSTDEQVFCIFYVIFNFGLSAYLIGNMTNLVVHWTQRTKRYRDTVQAASNFAHRNQLPQRLQDQIFSHFRMKYKIDLEGLEQQEIICSLPKAIQSSIAYHRFFNVIKEVYLFKGVSSDLLFQLVTQLNAEFFPPREDVILQNESPTDFYILSIGSVELILQENGIERAFREVKQFEVFGEIGVLCYRPQLYTARTRLLSQILRLSRTSFLNLVHNNVEDGTIIMNNFLQHVHNLSLTYPAMVGFMSEVETLLSTGKMDLPISLVFAAEKDDDMLLHQLLKKGSDPNEIDHKNGKTPLHVAAFKGSDHCVVLLLEFGADTNIQDFEGNISLCEAMKGGHELVKKLLIDNGADISSANVTPLAIFAIEKNDIQLLKDIMKLGGDIVTNFTKEGTTALHAAVCEGNVQIVKFLVEHGADIDKHDKAGWTPRNLADHQCHEEIQNMFKEIPHVIPQMPNNNGGSNIPKSYSEPSMLAMSRGGSFRPNQDSTCLNGHQKRRVGSSRNSFFGMVTSAKRDKSGISASQDGQTTTSTRAHELPIRVILSRQEKSEQPKRLVFLPQSLPELLDIGAQKLGFSPSKVLTEDGAEIEDINLIREGDHLILV* 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3380 870 Pfam Ankyrin repeats (many copies) 554 596 IPR002110 GO:0005515
Tpr1g3380 870 PANTHER POTASSIUM CHANNEL AKT1 14 869 IPR045319 GO:0005249|GO:0006813
Tpr1g3380 870 Pfam KHA, dimerisation domain of potassium ion channel 807 869 IPR021789 -
Tpr1g3380 870 Gene3D Jelly Rolls 348 506 IPR014710 -
Tpr1g3380 870 Pfam Ion transport protein 64 307 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Tpr1g3380 870 Gene3D - 528 714 IPR036770 -
Tpr1g3380 870 ProSiteProfiles Ankyrin repeat profile. 659 691 IPR002110 GO:0005515
Tpr1g3380 870 SMART ANK_2a 527 556 IPR002110 GO:0005515
Tpr1g3380 870 SMART ANK_2a 624 654 IPR002110 GO:0005515
Tpr1g3380 870 SMART ANK_2a 659 688 IPR002110 GO:0005515
Tpr1g3380 870 SMART ANK_2a 561 590 IPR002110 GO:0005515
Tpr1g3380 870 SMART ANK_2a 594 623 IPR002110 GO:0005515
Tpr1g3380 870 ProSiteProfiles Ankyrin repeat region circular profile. 659 691 - -
Tpr1g3380 870 SUPERFAMILY Ankyrin repeat 493 714 IPR036770 -
Tpr1g3380 870 PRINTS EAG/ELK/ERG potassium channel family signature 75 82 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tpr1g3380 870 PRINTS EAG/ELK/ERG potassium channel family signature 98 108 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tpr1g3380 870 PRINTS EAG/ELK/ERG potassium channel family signature 109 118 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tpr1g3380 870 PRINTS EAG/ELK/ERG potassium channel family signature 248 265 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tpr1g3380 870 PRINTS EAG/ELK/ERG potassium channel family signature 274 285 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tpr1g3380 870 PRINTS EAG/ELK/ERG potassium channel family signature 292 301 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tpr1g3380 870 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 14 869 - -
Tpr1g3380 870 ProSiteProfiles Ankyrin repeat profile. 594 626 IPR002110 GO:0005515
Tpr1g3380 870 ProSiteProfiles KHA domain profile. 807 870 IPR021789 -
Tpr1g3380 870 ProSiteProfiles Ankyrin repeat region circular profile. 561 592 - -
Tpr1g3380 870 Pfam Cyclic nucleotide-binding domain 400 485 IPR000595 -
Tpr1g3380 870 Pfam Ankyrin repeats (3 copies) 602 689 IPR002110 GO:0005515
Tpr1g3380 870 ProSiteProfiles cAMP/cGMP binding motif profile. 380 499 IPR000595 -
Tpr1g3380 870 SMART cnmp_10 380 497 IPR000595 -
Tpr1g3380 870 SUPERFAMILY Voltage-gated potassium channels 57 301 - -
Tpr1g3380 870 Gene3D - 63 301 - -
Tpr1g3380 870 SUPERFAMILY cAMP-binding domain-like 305 499 IPR018490 -
Tpr1g3380 870 PRINTS Ankyrin repeat signature 562 577 IPR002110 GO:0005515
Tpr1g3380 870 PRINTS Ankyrin repeat signature 675 689 IPR002110 GO:0005515
Tpr1g3380 870 CDD CAP_ED 380 493 IPR000595 -
Tpr1g3380 870 ProSiteProfiles Ankyrin repeat profile. 561 593 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3380 Tpr-Chr1 38175795 38180793 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3380 12 869 Ion Channels AT2G25600 50.691 0.0 862
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3380 K21867 - gmx:100809960 1003.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3380 1 38175795 38180793 Tpr1g3380 1 38175795 38180793 ECH
Tpr1g3380 1 38175795 38180793 Tpr7g0602 7 5191004 5195955 PCT