Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3371 ATGGACAACAATGAAGTTTCAAGAGTTGATAGTTTAAGAAGAACAAGTAGTTCTAATTCTAACTTATGGAGGAACAATAGTATGGATGTTTTTTCAACATCTGAACGTGAAGATGATCAAGAAGCACTTAAATGGGCTGCTATTGAAAGACTCCCTACATATCTAAGGATTAGAAGAAGTATACTCGATAATCAAGAAGTTGATGTCGAAAAGCTTGGATTAACTGAGAGAAAAGTTCTTTTAGAGAGACTTGTGAAAATTGCTGAAGAAGATAATGAAAAGTTTTTGTTGAAACTCAAGGAAAGAATGGAAAGAGTTGGATTAGATATTCCAAAAGTTGAGGTAAGATTTGAGCATATAAATGTGGAAGCACAAGTTTATGTTGGAGGAAGAGCTTTACCTTCATTGCTCAACTTCTTTGTTAATGTCTTAGAGGGATTCTTAAATTATTTTCATATTATTCCAAGTCCAAAGAAACCATTACATATTCTTCAAAATGTTAGTGGAATCATAAAGCCTCAAAGAATGACATTACTTTTGGGGCCACCAGGCTCTGGAAAGACCACTTTGCTTTTGGCCTTGGCTGGAAAACTTGCCAAAGAATTGAAAAATTCTGGGAGAGTAACATACAATGGAGAAGGACTAGAAGAGTTTGTTCCACAAAGAACATCAGCTTATATAAGTCAATATGATAATCACATTGGAGAAATGACTGTCAGAGAAACACTTGCTTTCTCTGCAAGATGTCAAGGGGTTGGACATAATTATGATATGTTGACTGAACTACTCAGAAGAGAAAAAGAAGCAAAGATTAAACCAGATCCTGATGTTGATGCCTATATGAAAGCAGCAGCACTAGAAGGACAACAGGCGAGCGTCGTAACTGACTATATTCTCAAGATTTTAGGACTTGAAATCTGTGCTGACATTATGGTAGGAGATGAAATGATAAGAGGTATCTCAGGAGGACAGAAAAAGAGAGTAACAACAGGTGAGATGCTGGTTGGACCTATAAAGGTTTTGTTCATGGATGAGATATCAACTGGTTTGGACAGTTCAACAACTTTTCAAATAATCAGCTCAATCAGACAATCAATCCATATTCTGAATGGAACTGCACTTGTGTCTTTGCTACAACCAGCACCAGAAACTTATGAACTATTTGATGATATAATACTTCTCACAGATGGACAAATTGTGTATCAAGGACCAAGAGAAAATGTACTTGAGTTTTTCGAATCAATGGGATTCAAATGTCCTGAAAGAAAAGGAGTTGCTGATTTCTTACAAGAAGTGACATCAAGAAAAGATCAATGGCAATATTGGGCAAATAAAGATGAACCTTATAGTTTTGTTACTGTCAAGGATTTTTCTGAAGCCTTTCAGTTATTCCACATTGGTCAAAAACTTGGAGATGAGCTAGCCCATCCTTTTGAAAAGTCTAAAGGCCATGCAAATATCTTGACCACAAAGAAATATGGTGTTAACAAGAAGGAGCTTTTGAAGGCTTGTGCTAGCAGAGAATTTTTGCTTATGAAGCGAAATTCATTTGTCCATATATTCAAAGTCACTCAACTTATTTATTTAGCTATCATGACGACAACATTGTTTCTAAGAACAAAGATGCATAAGGATACTGTGGAAGATGGAGGAACATACATGGGAGCACTATTCTTCACAGTGACAGTAGCAATGTTCAATGGAATATCAGAGCTAAATATGACAATCATGAAACTTCCTGTCTTTTACAAGCAAAGAGACCTTCTTTTCTATCCTTCATGGGCTTATTCTCTTCCACCATGGATCCTCAAAATACCAATAACTCTTATAGAAGTTTTCATTTGGGAAGCCATTACTTACTATGCCATCGGCTATGATCCAAATTTTGTAAGGCTTTTAAAACAGTATTTGATAATCTTTTGCATTAACCAAATGGCATCTTCACTGTTTCGGTTGATGGCAGCCTTAGGAAGGGATGTTGTAGTTGCAAACAATGTTGGATCATTTGCATTACTAGTAGTTCTGGTTTTGGGAGGATTTGTGATTTCAAGAGAGGATGTGCACAAATGGTTTCTGTGGGGTTACTGGTCCTCACCACTGATGTATGGACAGAATGCTATAGCTGTGAATGAATTTCTTGGACATAGTTGGAGAAAGGTTACTCAAAATTCCAATGAAACATTGGGAGTTTTGGTAATGAAAACTCGCGGTTTTTTCCCACAAGCTTACTGGTATTGGATTGGTGTAGGAGCATTGATTGGTTATGTTTTTCTATTCAACTTTCTGTTCACATTGGCTTTACAATATCTCAGTCCATTCAGAAAGGATCAAGCAGGGCTATCTGAGGAGAAATTGCTGGAGAGAGATGCTTCAACAGCTGAAGAGTTTACTCAGTTACCGAATCGAAAGAGAATTTCAGAAACAAAGATTGTTGAAGAAGAACTTATATCATCCAGATCTTTTTCTGCAAGAGCCGGTAAGGATAAAGCTAGTGTAAGTGGAAGGAGAGGCATGGTTCTTCCTTTTCAACCTCTATCCATCACTTTCGATGAAATCAGATATGCTGTAGACATGCCTCAGGAAATGAAAAGTCAAGGAGTTTTCGAGGACCGTCTTGAACTTTTGAAGGGTATTAGTGGTGCATTTAGGCCTGGAGTTCTAACAGCTCTAATGGGAGTAAGTGGTGCTGGAAAGACTACTCTAATGGATGTTTTAGCCGGAAGAAAAACTGGTGGATATATTGATGGAAACATCACAATATCTGGTTATCCAAAGAATCAAAAAACATTTGCTCGCATATCAGGATATTGCGAACAATTTGATATTCACTCGCCTAATGTTACAGTTTATGAATCTTTGCTATATTCAGCATGGCTTCGGTTGCCACCTGAAGTTGATAAAGCTACGAGAAAGATGTTTATCGAGGAAGTTATGGAGCTTGTAGAGCTTAACTCATTAAGAGAAGCACTTGTTGGATTGCCAGGCGAGAATGGACTTTCAACTGAACAACGTAAGAGACTTACAATTGCAGTTGAACTTGTAGCAAATCCATCAATAATATTCATGGATGAGCCAACCTCTGGCCTTGATGCTAGAGCAGCTGCAATTGTAATGAGAACGGTAAGGAACACCGTGGACACAGGACGTACTGTGGTTTGCACGATCCATCAGCCAAGTATTGACATATTTGACTCCTTCGATGAGCTTCTACTTATGAAATTGGGAGGTGAACAAATATATGCCGGTCCATTAGGCCGCCACTGTTCTCAGTTGATTCATTATTTTGAGGCTATTGAAGGAGTTCCTAAGATCAAAGATGGTTATAATCCTGCAACATGGATGTTGGAAGTTACATCAGCAGGATCAGAAGCAAATCTTAAGGTCGACTTCACTAATGTATACAGAAACTCGGAACTATACCGGAGAAACAAACAATTGATCCAGGAATTAAGTATACCTCCTCAAGATTCAAAGGATTTATACTTTGATACTCAATATACACAAACTATGTTGGCACAATGTAAAGCTTGCTTATGGAAACAACATTTATCATATTGGCGAAACACGTCGTATACAGCAGTTAGACTGTTATTTACAACACTAATAGCTATCTTGTTTGGAATCATATTTTGGAACATTGGATTGAAAAGGAGAAAGGAACAAGATCTTTTCAATGCAATGGGATCAATGTATGCTTCTGTTATCTTTATTGGAGTACAAAATGGTGCCTCTGTGCAGCCAGTAATAGCTGTTGAGAGAACAGTCTTTTATAGAGAAAGAGCTGCTGGAATGTATTCTGCTTTGCCTTATGCAATAGCACAGGTGATTATAGAGCTTCCACACATCTTGGTTCAGACACTGGTTTATGGTATTATTGTATATTCCATGATGGGATTGGATTGGACAACATCAAAATTCTTGTGGTATCTTTTCTTCATGTACTTCACTTTCTTGTACTATTGTTTCTATGGTATGATGACCATGGCTATCAGTCCCAACCCACATGTTGCTGCCATAATGTCTAGTGCATTCTATGCAATTTGGAGCCTTTTCTCAGGCTTTGTCATTCCCTTATCTAGAATACCAATATGGTGGAAGTGGTACTATTGGATATGTCCAGTTGCATGGACCTTGAATGGATTGGTGACATCTCAATATGGAGACAACATGGAAAAACTTGAGAATGGTCAAAGGGTTGAAGAATTTGTGAGAAATTACTTTGGGTTTAAACATGACTTCCTAGGAGTGGTTGCAATTGTTGTGGCTGGTTTCTCAGTGTTGTTTGCATTTATCTTCACTCTTGGCATCAAAGCATTCAACTTCCAAAAAAGATGA 4335 0.3765 MDNNEVSRVDSLRRTSSSNSNLWRNNSMDVFSTSEREDDQEALKWAAIERLPTYLRIRRSILDNQEVDVEKLGLTERKVLLERLVKIAEEDNEKFLLKLKERMERVGLDIPKVEVRFEHINVEAQVYVGGRALPSLLNFFVNVLEGFLNYFHIIPSPKKPLHILQNVSGIIKPQRMTLLLGPPGSGKTTLLLALAGKLAKELKNSGRVTYNGEGLEEFVPQRTSAYISQYDNHIGEMTVRETLAFSARCQGVGHNYDMLTELLRREKEAKIKPDPDVDAYMKAAALEGQQASVVTDYILKILGLEICADIMVGDEMIRGISGGQKKRVTTGEMLVGPIKVLFMDEISTGLDSSTTFQIISSIRQSIHILNGTALVSLLQPAPETYELFDDIILLTDGQIVYQGPRENVLEFFESMGFKCPERKGVADFLQEVTSRKDQWQYWANKDEPYSFVTVKDFSEAFQLFHIGQKLGDELAHPFEKSKGHANILTTKKYGVNKKELLKACASREFLLMKRNSFVHIFKVTQLIYLAIMTTTLFLRTKMHKDTVEDGGTYMGALFFTVTVAMFNGISELNMTIMKLPVFYKQRDLLFYPSWAYSLPPWILKIPITLIEVFIWEAITYYAIGYDPNFVRLLKQYLIIFCINQMASSLFRLMAALGRDVVVANNVGSFALLVVLVLGGFVISREDVHKWFLWGYWSSPLMYGQNAIAVNEFLGHSWRKVTQNSNETLGVLVMKTRGFFPQAYWYWIGVGALIGYVFLFNFLFTLALQYLSPFRKDQAGLSEEKLLERDASTAEEFTQLPNRKRISETKIVEEELISSRSFSARAGKDKASVSGRRGMVLPFQPLSITFDEIRYAVDMPQEMKSQGVFEDRLELLKGISGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGNITISGYPKNQKTFARISGYCEQFDIHSPNVTVYESLLYSAWLRLPPEVDKATRKMFIEEVMELVELNSLREALVGLPGENGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDSFDELLLMKLGGEQIYAGPLGRHCSQLIHYFEAIEGVPKIKDGYNPATWMLEVTSAGSEANLKVDFTNVYRNSELYRRNKQLIQELSIPPQDSKDLYFDTQYTQTMLAQCKACLWKQHLSYWRNTSYTAVRLLFTTLIAILFGIIFWNIGLKRRKEQDLFNAMGSMYASVIFIGVQNGASVQPVIAVERTVFYRERAAGMYSALPYAIAQVIIELPHILVQTLVYGIIVYSMMGLDWTTSKFLWYLFFMYFTFLYYCFYGMMTMAISPNPHVAAIMSSAFYAIWSLFSGFVIPLSRIPIWWKWYYWICPVAWTLNGLVTSQYGDNMEKLENGQRVEEFVRNYFGFKHDFLGVVAIVVAGFSVLFAFIFTLGIKAFNFQKR* 1445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3371 1444 CDD ABCG_PDR_domain2 844 1082 IPR034003 -
Tpr1g3371 1444 Gene3D - 150 455 IPR027417 -
Tpr1g3371 1444 PANTHER ABC-2 AND PLANT PDR ABC-TYPE TRANSPORTER FAMILY PROTEIN 15 1444 - -
Tpr1g3371 1444 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 421 IPR027417 -
Tpr1g3371 1444 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 870 1084 IPR027417 -
Tpr1g3371 1444 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 148 421 IPR003439 GO:0005524
Tpr1g3371 1444 Gene3D - 863 1096 IPR027417 -
Tpr1g3371 1444 SMART AAA_5 884 1076 IPR003593 -
Tpr1g3371 1444 SMART AAA_5 173 398 IPR003593 -
Tpr1g3371 1444 Pfam ABC-2 type transporter 500 712 IPR013525 GO:0016020|GO:0140359
Tpr1g3371 1444 Pfam ABC-2 type transporter 1173 1385 IPR013525 GO:0016020|GO:0140359
Tpr1g3371 1444 PANTHER ATP-BINDING CASSETTE TRANSPORTER 15 1444 - -
Tpr1g3371 1444 Pfam ABC-2 type transporter 379 431 IPR043926 GO:0140359
Tpr1g3371 1444 Pfam Plant PDR ABC transporter associated 717 778 IPR013581 -
Tpr1g3371 1444 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 847 1099 IPR003439 GO:0005524
Tpr1g3371 1444 Pfam ABC transporter 164 346 IPR003439 GO:0005524
Tpr1g3371 1444 Pfam ABC transporter 875 1027 IPR003439 GO:0005524
Tpr1g3371 1444 Pfam ABC-transporter N-terminal 68 139 IPR029481 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3371 Tpr-Chr1 38102238 38112524 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3371 885 1059 Calmodulin-binding Proteins AT2G36910 26.087 5.61e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3371 K08711 - gmx:100810505 2539.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3371 1 38102238 38112524 Tpr1g3371 1 38102238 38112524 ECH
Tpr1g3371 1 38102238 38112524 Tpr7g0576 7 4844947 4852902 PCT