Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3370 ATGGAGAATAGTGACACTAAAACATGGAAGAACCATTGCATCAATGTTTTCTCAAAATCTGAACGTGAAGATGATGAGGAAGCTCTTAAGTGTGTTGCAATGAAGAGAATCCTTACAAATGCATGCTATAGGAAAAGTGTAGAGACTGAAGAAGAAGGAAAAGATGTTGAAAAAAAGGCTTTGTTAGAAAGACTTGTGAAAATAGCAGAAGAAGATAATGAAAAGTTCTTGTTGAAACTCAAGGAAAGAATGGACAGAGTGGGACTTGAGCTTCCAACAATTGAAATAAGATTTAAGGATATAAATGTTGAAGCACAAGTTTATGTTGGAAGTAGAGCATTGCCTTCATTACTTAACTTCTTTGTGAATGTCATTGAGGGTTGTTTAAATAATCTTCAAATAATTCCAAGTCCAAAGAAACAGTTACATATACTTCAGAATGTTAGTGGAATCATAAAGCCTAAAAGGATGACATTGCTTTTAGGGCCACCTGGTTCTGGAAAGACCACTTTGCTTTTGGCATTGGCTGGAAGACTTGGCAAAGATTTGAAGAATTCTGGGAGAGTAACATACAATGGAGAAGGACTAGAAGAGTTTGTGCCACAAAGAACATCAGCTTATGTAAGTCAATATGATAATCACATTGGAGAAATGACTGTTAGAGAAACACTAGATTTTTCAGCCAGATGTCAAGGGGTTGGACAAAATTACGAAATGTTGACTGAACTATTGAAAAGAGAGAAAGAATCACAGGTTGAACCAGATCCTGATATTTATGCTTATATGAAGGAAGCAGCAACAGAAGGTCAGCAGAACAGTGTAGTCATTGACTATATTCTTAAGATTTTGGGACTTGAAGTTTGTGCTGACATAATGGTAGGAGACCAAATGATAAGAGGTATCTCAGGAGGGGAGAAAAAGCGACTCACTACAGGTGAGATGCTGGTTGGACCTATAAAGGTGTTATTCATGGATGAGATATCAAATGGTTTGGACAGTTCAACAACTTTTCAGATAATCAACTCAATCAAGCAGTCCATACATATTCTAAATGGAACTGCACTTGTTTCTCTGCTACAACCAGCACCAGAAACTTATGACCTATTTGATGATATTATACTTCTCACAGATGGACAAATTGTGTATCAAGGACCAAGAGAAAATGTACTTGAGTTTTTTGAATCAATCGGTTTCAAGTGTCCGGAAAGAAAAGGCGTCGCCGACTTCTTACAAGAAGTGACATCAAGAAAAGACCAATGGCAATATTGGGCGCGTAAAGATGAACCTTATAACTTTGTCACTGTCAAGGATTTTGCTCGAGCCTTCGAATTATTTCACGTCGGTCAACAACTTGGAGAAGAGATGGCCGATCCGTTTAATAAGTCGAAATTTCATTCAAATGCCTTGATCACAAAGAAATATGGTATTAACAAGAAAGAGTTGTTAAGGGCTTGTGTTAGCAGAGAATTGTTGCTTATGAGGCGGAATTCGTTTATCTACATATTCAAAGCCACACAACTTACATATTTAGCAACCTTGACAACAATGTTATTTCTACGACCAACGATGCATCATTCGACCTTCGAGGATGCAGAAACATACATGGGAGCACTATTCTTCACAGTGACAGTAGCAATGTTCAATGGAATATCAGAGCTAAATATGACAATCATGAAACTTCCTATCTTTTACAAACAAAGAGATCTTCTTTTCTATCCTTCATGGGCTTATTCTCTTCCACCATGGATCCTCAAAATACCAGTAACTCTCATAGAAGTTGCCATTTGGGAATGCATATCTTACTACGGCATTGGCTACGATCGAGATACTGGAAGGTTTTTTAAACAGTACTTGGTAATCTTATGTATTAATCAGATGGCGTCTGCGCTATTTCGGTTTATGGCAGCATTAGGAAGGGATATTGTAGTTGCAAACACATTTGGAACATTTTCATTACTTGCAGTTACTGTTTTGGGAGGATTTGTTATTTCAAGAGATGATGTGAGCAAATGGTTTCTGTGGGGTTATTGGTCGTCGCCTTTGATGTATGGACAAAATGCTATAGCTGTGAATGAATTTCTTGGACATAGTTGGAGAAACGTTACTAGTACTACTTCCAATGAAACATTGGGAGTATATATACTGAAATCTCGCGGATTTTTTCCACAAGCTTATTGGTATTGGATTGGAGTTGGAGCTTTGATTGGTTATGTTTTTCTATTTAATTTTTTCTTCGCCTTGGCGTTGCACTGTCTAAGTCCATTCAGAAAGGATCAAGCAGGCTTATCCCAAGAGAAATTGCTAGAGCGAAATGCTTCCACGGCTGAAGAGTTCATACAATCACAAACACAAAAGAGCTCTTCTGATACAAAGATGGACGAAGCAGTTGTCGAAAACAAAGCTAGCAGTACTGGAAAAAAAGGGATGGTTCTTCCTTTTCAACCTCTATCCCTCACTTTTGATGATATCAGATATTTTGTTGACATGCCACAGGCAATGAAAAGTCAAGGAGTTTGCGAGGATCGGCTCGAACTTTTGAAGGGTGTTAGTGGTGCTTTTAGACCAGGAGTACTAACAGCTCTTATGGGTGTAAGTGGTGCTGGAAAGACTACTCTAATGGATGTTTTAGCCGGAAGAAAAACTAGTGGATATATTGAAGGAAGCATCACAATATCTGGTTATCCAAAGAATCAAGAAACATTTGCTCGCATATCGGGATATTGTGAACAATCCGATATCCACTCACCTAATGTTACAGTTTATGAATCTTTGCTATATTCTGCATGGCTTCGTTTATCGCCTGAAGTTGATCGTAAAACTAGAAAGATGTTCATTGAAGAAGTTATGGAGCTTGTAGAGCTTAACTCATTAAGAGATGCTCTTGTTGGATTGCCAGGAGAGAATGGACTTTCAACCGAGCAACGCAAAAGGCTTACAATTGCAGTTGAACTTGTAGCAAATCCATCGATAATATTCATGGATGAGCCAACTTCTGGCCTTGATGCTAGAGCAGCTGCAATCGTAATGAGAACAGTAAGGAACACCGTGGACACAGGACGTACCGTGGTTTGCACCATCCATCAGCCAAGTATAGATATATTTGATGCCTTCGATGAGCTTCTACTTCTGAAATCGGGAGGTGAGCAGATATTTGCCGGTCCAATAGGCGACTACTGTTCCGATCTGATCCAGTACTTTGAGGCTATTGAAGGAGTTTCTAAGATCAAAGAGGGTTATAATCCTGCAACATGGATGTTGGAAGTTACATCAGCAGCAAAAGAGGAAAATTTTAAGGTCAACTTCACTGATGTGTACAAAAACTCAGAAATACACCGGAGAAATAAACAATTGATCCAGGAGCTTAGTGTTTGTTCTCAAGGTTCCGAGGATCTATACTTTGATGCTCAGTATTCACAAACTTTTGTAGCACAATGTATAGCTTGTCTATGGAAACAAAATTTATCATATTGGCGGAATACGTCATACACAGCAGTTAGACTCCTATTTACTATCATGACAGGTGTATTGTTTGGCCTGATTTTTTGGAATGTTGGCTCGAAAAGGAGAAAGGAGCAAGATCTATTCAATGCAATGGGATCAATGTATGCCGCTGTTACCTTCATAGGAGTTGTAAATGGTGCCTCGGTGCAACCAATAGTAGCAATTGAGAGAACAGTTTTTTATCGAGAAAGAGCTGCAGGAATGTATTCAGCTTTGCCATATGCTCTTGCACAGGTTATTATAGAGCTTCCTCATATCTTGGTTCAAGCTCTTGTATATGGTATCATAGTATATGTGATGATGGGATTTGAGAGGACAATATCAAAACTTATGTGGAATCTCTTCTTCACATACTTTAGTTTCTTATACTATACCTACTATGGTATGATGACAATGGCCATAACTCCAAATCCACAAGTTGCTGGCATATTGTCTACCTCATTCTATGCAATTTGGTGCCTTTTCTCAGGCTTCATCATTCCCTTATCTAGAATACCAATATGGTGGAAGTGGTACTATTGGATATGTCCTGTTGCATGGACGTTGAATGGATTGGTGACTTCCCAATATGGAGACATCATGGAACCACTTGAGAATGATAAAAGTGTTAAAGAATTTGTGAAGAGTTATTTTGGATTTGAACAGGAAAATCTAGGAATGGCTGCAATTTTTGTGGCTGGTTTCTCAGTGTTGTTTGCACTTATCTTCACCTTTGGCATCAAAGCATTCAATTTCCAAAAAAGATGA 4248 0.3847 MENSDTKTWKNHCINVFSKSEREDDEEALKCVAMKRILTNACYRKSVETEEEGKDVEKKALLERLVKIAEEDNEKFLLKLKERMDRVGLELPTIEIRFKDINVEAQVYVGSRALPSLLNFFVNVIEGCLNNLQIIPSPKKQLHILQNVSGIIKPKRMTLLLGPPGSGKTTLLLALAGRLGKDLKNSGRVTYNGEGLEEFVPQRTSAYVSQYDNHIGEMTVRETLDFSARCQGVGQNYEMLTELLKREKESQVEPDPDIYAYMKEAATEGQQNSVVIDYILKILGLEVCADIMVGDQMIRGISGGEKKRLTTGEMLVGPIKVLFMDEISNGLDSSTTFQIINSIKQSIHILNGTALVSLLQPAPETYDLFDDIILLTDGQIVYQGPRENVLEFFESIGFKCPERKGVADFLQEVTSRKDQWQYWARKDEPYNFVTVKDFARAFELFHVGQQLGEEMADPFNKSKFHSNALITKKYGINKKELLRACVSRELLLMRRNSFIYIFKATQLTYLATLTTMLFLRPTMHHSTFEDAETYMGALFFTVTVAMFNGISELNMTIMKLPIFYKQRDLLFYPSWAYSLPPWILKIPVTLIEVAIWECISYYGIGYDRDTGRFFKQYLVILCINQMASALFRFMAALGRDIVVANTFGTFSLLAVTVLGGFVISRDDVSKWFLWGYWSSPLMYGQNAIAVNEFLGHSWRNVTSTTSNETLGVYILKSRGFFPQAYWYWIGVGALIGYVFLFNFFFALALHCLSPFRKDQAGLSQEKLLERNASTAEEFIQSQTQKSSSDTKMDEAVVENKASSTGKKGMVLPFQPLSLTFDDIRYFVDMPQAMKSQGVCEDRLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYIEGSITISGYPKNQETFARISGYCEQSDIHSPNVTVYESLLYSAWLRLSPEVDRKTRKMFIEEVMELVELNSLRDALVGLPGENGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLLKSGGEQIFAGPIGDYCSDLIQYFEAIEGVSKIKEGYNPATWMLEVTSAAKEENFKVNFTDVYKNSEIHRRNKQLIQELSVCSQGSEDLYFDAQYSQTFVAQCIACLWKQNLSYWRNTSYTAVRLLFTIMTGVLFGLIFWNVGSKRRKEQDLFNAMGSMYAAVTFIGVVNGASVQPIVAIERTVFYRERAAGMYSALPYALAQVIIELPHILVQALVYGIIVYVMMGFERTISKLMWNLFFTYFSFLYYTYYGMMTMAITPNPQVAGILSTSFYAIWCLFSGFIIPLSRIPIWWKWYYWICPVAWTLNGLVTSQYGDIMEPLENDKSVKEFVKSYFGFEQENLGMAAIFVAGFSVLFALIFTFGIKAFNFQKR* 1416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3370 1415 PANTHER ATP-BINDING CASSETTE TRANSPORTER 4 1415 - -
Tpr1g3370 1415 CDD ABCG_PDR_domain2 815 1053 IPR034003 -
Tpr1g3370 1415 Gene3D - 834 1069 IPR027417 -
Tpr1g3370 1415 Pfam ABC transporter 145 328 IPR003439 GO:0005524
Tpr1g3370 1415 Pfam ABC transporter 846 998 IPR003439 GO:0005524
Tpr1g3370 1415 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 818 1070 IPR003439 GO:0005524
Tpr1g3370 1415 Pfam ABC-2 type transporter 1144 1356 IPR013525 GO:0016020|GO:0140359
Tpr1g3370 1415 Pfam ABC-2 type transporter 481 693 IPR013525 GO:0016020|GO:0140359
Tpr1g3370 1415 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 841 1060 IPR027417 -
Tpr1g3370 1415 Pfam Plant PDR ABC transporter associated 698 760 IPR013581 -
Tpr1g3370 1415 Pfam ABC-2 type transporter 360 412 IPR043926 GO:0140359
Tpr1g3370 1415 Pfam ABC-transporter N-terminal 35 120 IPR029481 -
Tpr1g3370 1415 SMART AAA_5 154 379 IPR003593 -
Tpr1g3370 1415 SMART AAA_5 855 1047 IPR003593 -
Tpr1g3370 1415 PANTHER DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN 4 1415 - -
Tpr1g3370 1415 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 129 402 IPR003439 GO:0005524
Tpr1g3370 1415 Gene3D - 129 437 IPR027417 -
Tpr1g3370 1415 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 402 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3370 Tpr-Chr1 38089910 38098669 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3370 K08711 - gmx:100800368 2284.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g0576 7 4844947 4852902 Tpr1g3370 1 38089910 38098669 PCT