Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3363 ATGTCTCAAACTAACTGGGAAGCTGATAAGATGTTGGATGTTTACATCCATGATTACCTAGTGAAGAGGGATTTGAAGGCTTCAGCTCAGGCTTTTCAAGCTGAAGGGAAAGTATCCTCTGATCCTGTTGCTATTGATGCCCCGGGAGGATTTTTGTTTGAGTGGTGGTCGGTTTTCTGGGACATATTTATTGCTAGGACAAACGAGAAACATTCGGAAGTTGCCGCGTCTTATATTGAGACACAGTTAATTAAGGCCAGGGAGCAACAACAGCAGCAACAGCAACAACAACAACAGCAGCCACAACCTCAGCAGTCACAACAGCATCAACAGCAGCAGCAACAACAACAACAGCAGATGCAGATGCAACAGATGCTGTTACAGAGGCAGCATCAGCAGCAACAACAACAGCAGCAGCAGCAACAACAACAACAGCAGCAGCAGCATCAGCAACAACAACAACAGCAGCCGCAGCATCAGCAACAACAGCAGCAGCAGCAGCAACAACAACAGGGTAGGGATAGGACTCATCTCTTGAATGGTGGTGGTGGTGGTGCAAATGGGTTAGTTGGAAACCCTAGCACTGCAAATGCAATAGCAACAAAGATGTACGAGGAAAGGTTAAAAGTTCCCCTTCAAAGAGATTCTTTGGAAGATGCTGCAATGAAGCAAAGATTTGGAGACCAACTCTTGGACCCAAATCATGCCTCAATATTGAAGTCATCTGCAGCTCCTGGCCAGCCATCAGGGCAAGTTTTGCATGGTTCTGCTGGTGCGATGTCGCCACAAGTTCAAGCTCGTAGTCAGCAACTACCAGGGTCTACTCCGGATATAAAAACTGAGATTAATCCTGTTTTAAACCCTAGAGCTGCGGGTCCTGAAGGATCGTTGATGGCAATTCCTGGATCAAATCAAGGTGGCAATAATTTGACCCTGAAAGGGTGGCCACTCACAGGGTTGGAGCAACTTCGTTCGGGCTTACTCCAGCAACAAAAACCTTTCATACAGTCTCCACAACCTTTTCATCAACTTCCAATGTTGACACAACAACATCAGCAACAGCTTATGTTAGCACAACAAAACCTGGCATCACCATCTGCCAGTGATGATAGTAGAAGACTCCGAATGCTACTGAATAATAGGAATATGGGCGTAGGTAAGGATGGCCTTCCAAATCCTGTTGGTGATGTCGTATCAAATGTTGGATCACCCCTTCAAGCAGGTGGTCCTCCTTTTCCTCGCGGTGATACGGATATGCTAATGAAGTTGAAACTGGCTCAGTTACAACATCAACAACAGCAGAATTCCAATCCACAGCAGCAGCAACTTCAACAGCATACTCTTTCAAATCAGCAATCTCAGTCTGCAAATCATAACATGCATCAGCAAGATAAAGTAGGCGGAGGTGGTGGCAGTGTCACTGGAGATGGTAGCATGTCAAACTCCTTCAGAGGAAATGATCAGGTTTCAAAAAACCAGACTGGAAGAAAGAGAAAGCAGCCTGTATCTTCTTCTGGTCCTGCTAATAGCTCAGGAACAGCCAATACAGCAGGACCATCTCCGAGTTCAGCACCCTCAACTCCCTCAGGCTCAACTCATACACCAGGCGATGTGATATCAATGCCTTCTTCTATACCTCATAATAGTAGTTCTTCTAAGCCATTAATGATGTTTGGCACTGATGGCACCGGAACTCTTACCTCACCTTCAAACCAATTGGCAGATGTGGACCGCTTTGTTGAGGATGGATCTCTTGATGATAATGTTGAGTCTTTTTTATCCCATGATGATACAGACCATAGAGATCCAGTTGGACGTATGGATGTAAGCAAAGGTTTCACATTTTCTGAAGTAAATTCGGTTCGTGCTAGCACGAGCAAAGTTGTTTGTACTCATTTCTCATCCGACGGAAAATTGCTTGCAAGTGGTGGCCACGACAAAAAGGCTGTTTTGTGGTACACAGATTCTCTAAAGCAGAAAGCTACTCTTGAAGAGCATTCATCTTTAATCACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTCTTGCAACATCTTCATATGACAAAACTGTCCGGGTTTGGGATGTTGACAATCCTGGGTATTCGCTTCGTACCTTCACTGGGCATTCTGCATCTGTTATGTCACTAGACTTTCACCCTAATAAAGATGACCTTATCTGCTCTTGTGATTTTGACGGCGAGATAAGATATTGGAGTATTAACAACGGCAGTTGTGCTAGAGTGTCAAAGGGTGGCACTGCACAGATGAGATTTCAACCTCGGCTAGGGAGATTCCTTGCTGCAGCTGCAGAGAACGTTGTCTCTATACTTGATGTTGAGACACAAGCATGCCGATATTCACTTAAGGGTCACACAAAGTCAATACATTCTGTATGTTGGGACCCTTCTGGAGAGTTCTTGGCATCTGTCAGCGAAGACTCTGTCAGGGTTTGGACTCTTGGATCTGGAAGTGAAGGGGAATGTGTTCATGAACTTAGCTGTAATGGCAATAAGTTTCACTCGTGCGTTTTCCATCCAACGTATTCTTCATTGCTGGTTATTGGCTGTTACCAGTCATTGGAGCTATGGAACATGACCGAGAACAAAACAATGACTCTTTCTGCTCACGACGGTCTTATTGCTGCTTTGGCCGTCTCAACTGTAAACGGTTTGGTTGCTTCAGCCAGTCATGACAAGTTTGTCAAGCTCTGGAAATGA 2718 0.4518 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQPQPQQSQQHQQQQQQQQQQMQMQQMLLQRQHQQQQQQQQQQQQQQQQQHQQQQQQQPQHQQQQQQQQQQQQGRDRTHLLNGGGGGANGLVGNPSTANAIATKMYEERLKVPLQRDSLEDAAMKQRFGDQLLDPNHASILKSSAAPGQPSGQVLHGSAGAMSPQVQARSQQLPGSTPDIKTEINPVLNPRAAGPEGSLMAIPGSNQGGNNLTLKGWPLTGLEQLRSGLLQQQKPFIQSPQPFHQLPMLTQQHQQQLMLAQQNLASPSASDDSRRLRMLLNNRNMGVGKDGLPNPVGDVVSNVGSPLQAGGPPFPRGDTDMLMKLKLAQLQHQQQQNSNPQQQQLQQHTLSNQQSQSANHNMHQQDKVGGGGGSVTGDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSGSTHTPGDVISMPSSIPHNSSSSKPLMMFGTDGTGTLTSPSNQLADVDRFVEDGSLDDNVESFLSHDDTDHRDPVGRMDVSKGFTFSEVNSVRASTSKVVCTHFSSDGKLLASGGHDKKAVLWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSYDKTVRVWDVDNPGYSLRTFTGHSASVMSLDFHPNKDDLICSCDFDGEIRYWSINNGSCARVSKGGTAQMRFQPRLGRFLAAAAENVVSILDVETQACRYSLKGHTKSIHSVCWDPSGEFLASVSEDSVRVWTLGSGSEGECVHELSCNGNKFHSCVFHPTYSSLLVIGCYQSLELWNMTENKTMTLSAHDGLIAALAVSTVNGLVASASHDKFVKLWK* 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3363 905 Pfam WD domain, G-beta repeat 702 739 IPR001680 GO:0005515
Tpr1g3363 905 Pfam WD domain, G-beta repeat 784 818 IPR001680 GO:0005515
Tpr1g3363 905 Pfam WD domain, G-beta repeat 660 695 IPR001680 GO:0005515
Tpr1g3363 905 Pfam WD domain, G-beta repeat 622 652 IPR001680 GO:0005515
Tpr1g3363 905 Pfam WD domain, G-beta repeat 868 905 IPR001680 GO:0005515
Tpr1g3363 905 ProSiteProfiles Trp-Asp (WD) repeats profile. 663 698 IPR001680 GO:0005515
Tpr1g3363 905 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 873 905 - -
Tpr1g3363 905 ProSitePatterns Trp-Asp (WD) repeats signature. 682 696 IPR019775 -
Tpr1g3363 905 Pfam LisH 10 36 IPR006594 GO:0005515
Tpr1g3363 905 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 905 - -
Tpr1g3363 905 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 905 IPR044716 GO:0003714
Tpr1g3363 905 ProSiteProfiles Trp-Asp (WD) repeats profile. 621 662 IPR001680 GO:0005515
Tpr1g3363 905 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 706 744 - -
Tpr1g3363 905 SMART WD40_4 614 653 IPR001680 GO:0005515
Tpr1g3363 905 SMART WD40_4 656 695 IPR001680 GO:0005515
Tpr1g3363 905 SMART WD40_4 699 739 IPR001680 GO:0005515
Tpr1g3363 905 SMART WD40_4 825 864 IPR001680 GO:0005515
Tpr1g3363 905 SMART WD40_4 742 778 IPR001680 GO:0005515
Tpr1g3363 905 SMART WD40_4 781 819 IPR001680 GO:0005515
Tpr1g3363 905 SMART WD40_4 866 905 IPR001680 GO:0005515
Tpr1g3363 905 Coils Coil 122 155 - -
Tpr1g3363 905 MobiDBLite consensus disorder prediction 152 175 - -
Tpr1g3363 905 MobiDBLite consensus disorder prediction 427 534 - -
Tpr1g3363 905 SMART Lish 8 40 IPR006594 GO:0005515
Tpr1g3363 905 MobiDBLite consensus disorder prediction 474 534 - -
Tpr1g3363 905 ProSiteProfiles Trp-Asp (WD) repeats profile. 873 905 IPR001680 GO:0005515
Tpr1g3363 905 SUPERFAMILY WD40 repeat-like 615 905 IPR036322 GO:0005515
Tpr1g3363 905 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Tpr1g3363 905 Gene3D - 583 749 IPR015943 GO:0005515
Tpr1g3363 905 Gene3D - 750 905 IPR015943 GO:0005515
Tpr1g3363 905 MobiDBLite consensus disorder prediction 427 462 - -
Tpr1g3363 905 ProSiteProfiles Trp-Asp (WD) repeats profile. 788 828 IPR001680 GO:0005515
Tpr1g3363 905 MobiDBLite consensus disorder prediction 94 113 - -
Tpr1g3363 905 CDD WD40 617 905 - -
Tpr1g3363 905 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 663 698 - -
Tpr1g3363 905 ProSiteProfiles Trp-Asp (WD) repeats profile. 706 748 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3363 Tpr-Chr1 37997510 38006005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3363 639 868 U-box Gene Family AT2G33340 31.707 3.55e-20 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Tpr1g3363 WD40 0.048 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3363 - - gmx:100779972 1229.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3363 1 37997510 38006005 Tpr7g0573 7 4808838 4816116 PCT