LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr1g3356	ATGAAAGTGATGAAGGTGAAACATGTGTTAATGGTTACTGCATTAACCATGATGGTAGGAATAGTTGCAGCTGATTCAGAACCAAATACCTGCCGTCACACTTGTGGAAAAGTAGAAATTCCATATCCATTTGCCATAGACGTCAACAACAACGCTTCATCGGAATGTTTCTTGCATCGTAGATTCATTCGGCTCTCTTGCAATGAATCCAAAATATACGTTGGTAACGTGCCAGTGTTAAACATAAGCACCTCCACAGCTCAAATGGACGTGTTACTTAACGTCTCTTACTATTGCAGTGTCGATAATCAATATAAATCCAGGCTCCGTGGTCGTTCATATACCATTTCAAGCAAAGAAAACAAGTTCCTAACTATTGGTAATGACAGTTACGGTTACCTTAACAGTTACAAAGATAACAATACCTATTCAACAGGGTGCTTAACAAGATCTTTTGGCGATCGGAGATTGATTGATAACGGAACATGTTCGGGTATAGGGTGCTGCCAAGTTGATATTCCTCCTCGAATGTTGAATATAAGTATAGAAGCTTCTAATTTCAACAAAAATACATCGGATGTTTGTAGCTATTCATTTATTGTCAAGAATGGCAACTATACTTTTTCCACCACTCATTTATCAGAAGGTTTACCTTTCAAGCAATTACCTATGGTTCTTGACTGGACTGTTGGTGACTTTGACGAAAACTGCAGTACAGCTTCTTCCAGGAATAATGGAGTCAACTATGCATGCAAGAACAATAGCCATTGTCATGACAACGACACAGCTTTTGGTTACCTATGCAGCTGCAATCCAGGTTATGACGGAAATCCCTACGATCCCATTGGCTGCACAGACATTAACGAATGTGAAAGTGAAACAAACAAACACAGATGCAAAACTAAAGCAAACTGTAAGAACATTGATGGGAATCACACATGTTTCTGTCCAAAGTGGTATTCCGGAGATGGAACAATGGCAGGAGGGTGCAAAAATTCAATAGTATTACCTACTGTCCTCGGAGTAGGAGCAACATTTATTCTTCTTTTTCTGGGGACATTCTCGTACATCATATACCACAATAGGAAATCCATCAAAATGAGAGAGAAATTCTTTGAGCAGAATGGTGGTTTAATTTTGAAACAAAAACTCTCCACAAGAGAAGACTCCTCCTCTCAAACAACTCAAAGTGCTCAAATATTCACACAAGATCAGCTAAACAGGGCCACCAAAAACTTCGACGAGAGTTTAATCATTGGCAAAGGTGGTTTTGGTACTGTTTTCAAAGGATTTCTAGATAATAAAAGAATCGTGGCTATCAAAAAATCAAAAATAATAGATAGAAGCCAAATCGATCAATTCATCAATGAGGTGGTTGTTCTCTCTCAAATAAATCATAGGAATGTGGTCAAACTCTTGGGCTGTTGTTTAGAGACAGAAGTTCCTTTGTTGGTTTACGAATTTGTTACCAATGGTACCCTTTCTGGTTTTATACACAGACAAGGTAATAAGGTGAATAATGAATCATGGAAAACTCGTCTTAAGATAGCAGCAGAGGTAGCTGGAGCTCTGTCATATCTGCATTCATCTGCCTCAATACCCATTATCCATAGAGATGTCAAGAGTGATAACATTCTCTTAGATGGAACCAACACTGCCAAAGTATCTGATTTTGGAGCTTCAAGATTGGTTCCACTTGATCAAACTGAAGTAGCCACAATGGTGCAAGGAACTATTGGATACTTAGACCCAGAGTATATGCAAACAAGCCAATTGACTGAAAAAAGTGATGTATATAGCTTTGGGGTAGTTCTTGTGGAGCTGCTAACAGGGGAGACACCTTTTAGTTTTGGTAGGCCAGAAGAGAGAAGAAGTCTTGCTATGCATTTTCTGTCCTGCTTGAAAAAGGATAATGTGTTTGAAATTATTGAAGATGGTATGTTGAATGAAGAAAACAAACAAGAGATCAAGGAGGTAGCTGTTCTTGCGGCAAAGTGTTTGAGACTTAGAGGGGAAGAAAGACCTAGCATGAAGGAAGTGGCTATGGAATTGGAGGGAATGAGATTGATGGATAAGCACTCTTGGATCAATGATGACTTAAATGTAGAGGAGAATCAGTACTTGCTTCATGAATCGTCATCTAGCATTTATGAAACTGGTGATAGCAGCAAACATGGAGATATTGGATATGACAGCTTGAAAGATCAGGAACTGATTGTCTTGGATGATGGAAGATGA	2238	0.3887	MKVMKVKHVLMVTALTMMVGIVAADSEPNTCRHTCGKVEIPYPFAIDVNNNASSECFLHRRFIRLSCNESKIYVGNVPVLNISTSTAQMDVLLNVSYYCSVDNQYKSRLRGRSYTISSKENKFLTIGNDSYGYLNSYKDNNTYSTGCLTRSFGDRRLIDNGTCSGIGCCQVDIPPRMLNISIEASNFNKNTSDVCSYSFIVKNGNYTFSTTHLSEGLPFKQLPMVLDWTVGDFDENCSTASSRNNGVNYACKNNSHCHDNDTAFGYLCSCNPGYDGNPYDPIGCTDINECESETNKHRCKTKANCKNIDGNHTCFCPKWYSGDGTMAGGCKNSIVLPTVLGVGATFILLFLGTFSYIIYHNRKSIKMREKFFEQNGGLILKQKLSTREDSSSQTTQSAQIFTQDQLNRATKNFDESLIIGKGGFGTVFKGFLDNKRIVAIKKSKIIDRSQIDQFINEVVVLSQINHRNVVKLLGCCLETEVPLLVYEFVTNGTLSGFIHRQGNKVNNESWKTRLKIAAEVAGALSYLHSSASIPIIHRDVKSDNILLDGTNTAKVSDFGASRLVPLDQTEVATMVQGTIGYLDPEYMQTSQLTEKSDVYSFGVVLVELLTGETPFSFGRPEERRSLAMHFLSCLKKDNVFEIIEDGMLNEENKQEIKEVAVLAAKCLRLRGEERPSMKEVAMELEGMRLMDKHSWINDDLNVEENQYLLHESSSSIYETGDSSKHGDIGYDSLKDQELIVLDDGR*	746

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr1g3356	745	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	18	714	IPR045274	GO:0007166
	Tpr1g3356	745	SMART	egfca_6	286	331	IPR001881	GO:0005509
	Tpr1g3356	745	ProSitePatterns	Protein kinases ATP-binding region signature.	419	442	IPR017441	GO:0005524
	Tpr1g3356	745	Pfam	Wall-associated receptor kinase galacturonan-binding	31	89	IPR025287	GO:0030247
	Tpr1g3356	745	Gene3D	Phosphorylase Kinase; domain 1	375	488	-	-
	Tpr1g3356	745	Gene3D	Transferase(Phosphotransferase) domain 1	489	707	-	-
	Tpr1g3356	745	ProSiteProfiles	EGF-like domain profile.	286	326	IPR000742	-
	Tpr1g3356	745	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2	18	714	-	-
	Tpr1g3356	745	Gene3D	Laminin	232	288	-	-
	Tpr1g3356	745	SMART	serkin_6	413	696	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr1g3356	745	Gene3D	Laminin	289	330	-	-
	Tpr1g3356	745	Pfam	Protein tyrosine and serine/threonine kinase	418	684	IPR001245	GO:0004672\|GO:0006468
	Tpr1g3356	745	SUPERFAMILY	Protein kinase-like (PK-like)	391	685	IPR011009	-
	Tpr1g3356	745	SMART	egf_5	236	285	IPR000742	-
	Tpr1g3356	745	SMART	egf_5	289	331	IPR000742	-
	Tpr1g3356	745	CDD	STKc_IRAK	419	687	-	-
	Tpr1g3356	745	Pfam	Wall-associated kinase	161	270	IPR013695	GO:0004674\|GO:0016021
	Tpr1g3356	745	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	535	547	IPR008271	GO:0004672\|GO:0006468
	Tpr1g3356	745	ProSiteProfiles	Protein kinase domain profile.	413	696	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr1g3356	Tpr-Chr1	37929632	37937145	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr1g3356	4	745	Receptor kinase-like Gene Family	AT1G21250	42.950	0.0	548

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK	Tpr1g3356		PK_Tyr_Ser-Thr	1.1e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr1g3356	-		-	mtr:MTR_1g010260	1091.26