Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3354 ATGGGACTTTCAAAGAAAGAAGAAGAAAGAGTTGAAAGAATAATTCGAGGTTTATTAAAACTTCCCGAAAATCGAAGATGCATCAATTGCAATGCTTTGGGACCACAATATGTTTGTACAACTTTCTCAACATTTGTCTGCACAAATTGCAGTGGACTACATCGAGAGTTCACACATCGAGTAAAATCTGTGTCGATGGCAAAATTTACACCCGAAGAAGTCACAGCTATTCAAGCTGGTGGCAATGAGAGAGCAAAGCAGATTTATTTTAAAGGGTGGGATCCTCTACGACATTCTTATCCCGATTCTAGTAATATGCATAGACTCAGAGAATTTATCAAGAATGTCTACGTGGAAAGAAAATATGCCGGCGAAAGAAGTCAAGAAAATCTTCCCAGGATTAAATTGAATGACAAAGAGGAGTCTAATGAGAAGCCGAAGAGTAGTTCATTTCGATTAGAGTTCATAAGTCCGAAGTCAAGTCCTGCTCAAAGAAGTTCCAGTGCAAGAAGCGATGACGCGAGTGTTAGATATCTATATGATGAAAGCAGAAGTCCTAAATATGTACAAAAATGCACAAGGAATGGAGGATACAGCAGAAGTCCTATAAAGTTTGAGGTTGTTGATGACAGGTTTCGAGACGAAGAATATAGAAACCGCAGACAATCAAATCTTGAATCAAAGCTAAGACAACTTTCATTTGATGGTAAGAATGTGGACAGATTGCAAACTCCGGTTCAACCATCTTCGGGTGAAATGACGATGCAGAATGATTTATCTTTACAAGTTACAACTTCTGGTGGAGAAGGTTCTGTCGAGGAAAAACTATCTGAACAAAAAAGTAATAAATCTCAAGCTTATGATAATGCTATTGTACCAGTAGAAGCAACGCCGAGTATGACACAGGAAAGTGAAAATAATTGGGCCTCATTTGACACTTCTACAAAGGAAAATGTTCCTAAAACTTCAAACACCAACACCATGAAATCTCCTACAACAGAACCAACACCTGAGGCAAAAATTTCAAGTCCTTTAGACCTTTTACTTTTTGAATTGTCAGGCTCTTTTGCTCCAACCAGTGGCGAAAATGTTTTGACAACTTCAACAGTAGAAAAGGCCTCTACATTGGATTTTCCATCTACTTCAACGGAGGAGACAAATTCATCAACTTCTCAGCTGGCACAACCTTCTAATGAAGCTACTCCATCACAATCTGAGTTACTTGAGACACAAGACTCCATTGAAGATTCACATGTACATAAAGCACAAACAGAAGATTCAATTGAAGTTTCACATGCACATAAACCACAAACCGAAGATTCCATTGAATTTTCACATGCACACAAACCACCAACCGTGCAATCAACACAACCAACAGAATCACCAAATAAATATGTACCTTCAAGTAATGAGCCGTCATTTTATCCTAATACACACGAATCATCACATACTTTCGATGAACTTCCTTCTCAAACTGCCTCGAATCCTACTCAAGACACCGGACCTGATGTTAGTTCCCAGCCTAGTATAGTAAAAACCAAGTCTAGTGGAAGAATGGAACTTCCAGAGGATCTTTTTACTACAAAGTACTTTTCTGGTCCTCCACCACATCCAGGTTGGCAGAATCTTCAATCTCATGTCATGGGATATGGCATGCAACAGCAATATTATCCTAATGCAGTGCTTCCTCATCCTCACTCAGCACTTCCCATTGCACCAAAATCTATGAACCCTTTTGAAGTAACTGAAGGGAGAGGTCTATCTCATGCATCATCAGTTCCTAGTTTGGTATCAATGTATGGTGTGGTACCAGCTACATCACAAAGAACAGGATTAATACATACTTCAAGTCTTGGTTCTTTAGATACAATGATGCCTCAGTCCACAAGTTATGCATCCCCAATTCCTGGTCTGTGCTTTGATCAAGTTAATAATGAAGATCAGTATCATAGATCAAAAATAGTAAACACCTACAATAGTGACATAACTGGTTTTGGATCTCTAGACACCATTCAACAACCATATGGGACATATGGAACACAAGGAATTCCAAATTCCTTTTCCAATACAAGAAGAAATCCATTTGATTAG 2091 0.3869 MGLSKKEEERVERIIRGLLKLPENRRCINCNALGPQYVCTTFSTFVCTNCSGLHREFTHRVKSVSMAKFTPEEVTAIQAGGNERAKQIYFKGWDPLRHSYPDSSNMHRLREFIKNVYVERKYAGERSQENLPRIKLNDKEESNEKPKSSSFRLEFISPKSSPAQRSSSARSDDASVRYLYDESRSPKYVQKCTRNGGYSRSPIKFEVVDDRFRDEEYRNRRQSNLESKLRQLSFDGKNVDRLQTPVQPSSGEMTMQNDLSLQVTTSGGEGSVEEKLSEQKSNKSQAYDNAIVPVEATPSMTQESENNWASFDTSTKENVPKTSNTNTMKSPTTEPTPEAKISSPLDLLLFELSGSFAPTSGENVLTTSTVEKASTLDFPSTSTEETNSSTSQLAQPSNEATPSQSELLETQDSIEDSHVHKAQTEDSIEVSHAHKPQTEDSIEFSHAHKPPTVQSTQPTESPNKYVPSSNEPSFYPNTHESSHTFDELPSQTASNPTQDTGPDVSSQPSIVKTKSSGRMELPEDLFTTKYFSGPPPHPGWQNLQSHVMGYGMQQQYYPNAVLPHPHSALPIAPKSMNPFEVTEGRGLSHASSVPSLVSMYGVVPATSQRTGLIHTSSLGSLDTMMPQSTSYASPIPGLCFDQVNNEDQYHRSKIVNTYNSDITGFGSLDTIQQPYGTYGTQGIPNSFSNTRRNPFD* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3354 696 MobiDBLite consensus disorder prediction 130 174 - -
Tpr1g3354 696 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Tpr1g3354 696 Gene3D Arf GTPase activating protein 2 134 IPR038508 -
Tpr1g3354 696 CDD ArfGap_AGFG 12 122 - -
Tpr1g3354 696 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Tpr1g3354 696 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Tpr1g3354 696 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Tpr1g3354 696 MobiDBLite consensus disorder prediction 149 173 - -
Tpr1g3354 696 MobiDBLite consensus disorder prediction 302 340 - -
Tpr1g3354 696 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Tpr1g3354 696 MobiDBLite consensus disorder prediction 130 148 - -
Tpr1g3354 696 PANTHER ARFGAP/RECO-LIKE ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 696 - -
Tpr1g3354 696 MobiDBLite consensus disorder prediction 375 521 - -
Tpr1g3354 696 Pfam Putative GTPase activating protein for Arf 13 124 IPR001164 GO:0005096
Tpr1g3354 696 MobiDBLite consensus disorder prediction 375 410 - -
Tpr1g3354 696 MobiDBLite consensus disorder prediction 411 446 - -
Tpr1g3354 696 MobiDBLite consensus disorder prediction 264 285 - -
Tpr1g3354 696 MobiDBLite consensus disorder prediction 448 514 - -
Tpr1g3354 696 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Tpr1g3354 696 MobiDBLite consensus disorder prediction 302 339 - -
Tpr1g3354 696 PANTHER ARFGAP/RECO-RELATED 1 696 IPR044820 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3354 Tpr-Chr1 37918731 37923410 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3354 12 169 C2H2 Transcription Factor Family AT4G05330 32.317 2.41e-13 70.1