Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3350 ATGGAGCGACCCGGGAGCTTCAACGACGGTCAACATATTATAGAAATACCTGTGAATGTCGAGGCTTCTACATCCGCATCGTCTCGTGATAGACATTTTGATGCTGTAGACACGGTGCGTGTAGAAAGAGTAGGCAGTATGCAGTTGTCTGGTGGTCAGCCTTCGGTTTCAACCTCAGGCGTACCAATTGGATCAAATAGTAGGAATTCTTCGTTTGTAAGACGGGGGGATGCTCGTCGGAGTAGGAGTCCTGTTCATTCTGGATTATGGATATCTATTGAGCTAGTCCTGTTAGTAAGCCAGATTGTTGCGTCTGTCGTTGTTTTGTCATTGTCCAGGCATGAGCATCCGCATACGCCATTGTTTCAATGGATAGTGGGCTATGCATCTGGATGTGTTGCTACACTTCCTCTTCTTTTTTGGCGGTATTATAATCATAATCATATGCGAGAACAAGATACAGCTCAGTCACGTCAAACATCTCCTCGGGTTAGTGATCCTTCTGGGACACATCTGTCCATTTCAAGAAATAATGGTGATGTTGGTCAGGCTGCTGCTGCATCTTCTAGAGGAACTCAAGCTTCAATACTGATGAATAGAAGAACGAAGATACTTGTGGAGTACTTCAAAATATCCTTAGATTGCTTTTTTGCTGTGTGGTTTGTCGTTGGAAACGTATGGATCTTTGGGGGACATGCTTCTGCTGATGACGCTCCTAACTTGTATAGGTTATGTATAGTGTTTCTTGCATTTAGCTGCATTGGTTATGCCATGCCTTTCATCCTCTGTTCAACCATCTGCTGTTGTCTCCCATGTATAATTTCCATCCTCGGTGTTAGAGAGGATCTCACACAAAACAGAGGAGCAACTTCTGAATCCATTAATGCTCTGCCAACTTACAAGTTCAAGATGAAGAAAAATAAAAGAAATAGTGATAACAATTCTGCTAATATAGAAGGTGGAATTGTGGCTGCAGGAACTGAAAAAGAGCGTGTGATCTCTGGAGAAGATGCGGTTTGCTGCATCTGCCTGGCAAAGTATGAAAATAACGACGAGCTGAGAGAATTGCCTTGTTCTCATCTTTTCCACAAAGACTGCGTTGATAAGTGGTTGAAGATAAATGCATTGTGCCCTCTTTGCAAGAGTGAGGTTGGTGAAGACCTAACAGGATTGAGGTCCGGAGAAGATGCCACCCAAACAACGGGATGA 1209 0.4359 MERPGSFNDGQHIIEIPVNVEASTSASSRDRHFDAVDTVRVERVGSMQLSGGQPSVSTSGVPIGSNSRNSSFVRRGDARRSRSPVHSGLWISIELVLLVSQIVASVVVLSLSRHEHPHTPLFQWIVGYASGCVATLPLLFWRYYNHNHMREQDTAQSRQTSPRVSDPSGTHLSISRNNGDVGQAAAASSRGTQASILMNRRTKILVEYFKISLDCFFAVWFVVGNVWIFGGHASADDAPNLYRLCIVFLAFSCIGYAMPFILCSTICCCLPCIISILGVREDLTQNRGATSESINALPTYKFKMKKNKRNSDNNSANIEGGIVAAGTEKERVISGEDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINALCPLCKSEVGEDLTGLRSGEDATQTTG* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3350 402 MobiDBLite consensus disorder prediction 151 170 - -
Tpr1g3350 402 ProSiteProfiles Zinc finger RING-type profile. 340 381 IPR001841 -
Tpr1g3350 402 SMART ring_2 340 380 IPR001841 -
Tpr1g3350 402 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 402 - -
Tpr1g3350 402 MobiDBLite consensus disorder prediction 154 170 - -
Tpr1g3350 402 Pfam Ring finger domain 340 381 IPR001841 -
Tpr1g3350 402 CDD RING-H2_RNF111_like 339 381 - -
Tpr1g3350 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 321 388 IPR013083 -
Tpr1g3350 402 SUPERFAMILY RING/U-box 331 387 - -
Tpr1g3350 402 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3350 Tpr-Chr1 37880483 37885551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3350 74 386 C3H Transcription Factor Family AT1G80400 57.716 2.12e-138 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3350 - - gmx:100785559 634.795