Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3348 ATGAGAGAAAAGAAAATGAATAAGGAAAATGGTGAGAATGTGAGAGTGACTAGAGCAAGGGCTAGAGCCATGGAAGCAGCTTCAGGAAATGGAGAAGCTGTTGGATTGAGAGATATAACCAACATTTCAACAAAATCTCATCATAAGCGTTTTCAAACCTCGAATTTTCAGAAGAGTGAAGGTAATAAGAAGAGAAAGACCAAGGTAGCTTCACAAGATCATATCCCCTTACAAGTTGTGACAACCAAAGAGGATGCTAAGACAGAGTTAGCCGAAGATTCATCAATAATGATGGAAAAGTCACTGCAAGTGCAACCTTCTGTGGAAAATCCCCCGCTTTCAATGCAGGATTCTGTCAGCTCTCCGGATAAAGACATAAGTATTATATGTGAGAAACTGAGAGACTCAGTTGACTTGGGAATTGTGGACATTGATTCAAAGTTAAAGGATTCACTTGTTTGGACTTCTTATGCTCCTGATATATACAATAGTATTCATGTTAGAGAGTGTGAAAGGAGACCATCAGCTGATTACATGGAAAAGTTGCAGCAAGACATCACTCCAACTATGCGGGGAATTCTGGTTGATTGGCTTGTGGAGGTTACTGAGGAATATCAGCTAGTTCCAGACACACTTTACCTTGCTGTGAATCTCATTGATCGATTCCTTTCTCAACGTTTGGTTACAAAACAAATGCTCCAGTTGCTTGGTATCACTTGCATGCTGATTTCATCCAAGTATGAAGAGATTTTGGCTCCTCCATTACAAGATTTTTGCGACATCACAGATAATACATACTCGAAACAACAGGTCTTGAAAATGGAGAAAGAGGTTCTCAATCTCCTGCATTTCCAATTAGCTGTTCCTACAATCAAAACATTTCTCAGGAGGTTCATTGTTGTAGCACAATCTTCTTTCAAGGTTGTTTATGATGAACTGGAATTCATTGCAAATTATTTAGGAGAACTTGCTCTTATTGAATACAGCTTCTTGCAGTTTCGACCTTCCAAGATAGCTGCATCTGCGGTTTTTCTTGGCAGATGGACCCTCGACCAGTCAGAACATCCCTGGAATCCAACTCTAGAGCACTATACAAATTACAGAGCATCTGAGCTGAAAACTACTGTCCTTGCACTGCTGGATTTGCAACTTAATACCAAAGGTTGTTGTCTGACTGGTGTACGCGAAAAATATAACCAACAGAAGTTTCAAAGTGTGGCGAACTTGATTCCGAAACCTGTGGAATCTCTTTTCTAG 1257 0.4002 MREKKMNKENGENVRVTRARARAMEAASGNGEAVGLRDITNISTKSHHKRFQTSNFQKSEGNKKRKTKVASQDHIPLQVVTTKEDAKTELAEDSSIMMEKSLQVQPSVENPPLSMQDSVSSPDKDISIICEKLRDSVDLGIVDIDSKLKDSLVWTSYAPDIYNSIHVRECERRPSADYMEKLQQDITPTMRGILVDWLVEVTEEYQLVPDTLYLAVNLIDRFLSQRLVTKQMLQLLGITCMLISSKYEEILAPPLQDFCDITDNTYSKQQVLKMEKEVLNLLHFQLAVPTIKTFLRRFIVVAQSSFKVVYDELEFIANYLGELALIEYSFLQFRPSKIAASAVFLGRWTLDQSEHPWNPTLEHYTNYRASELKTTVLALLDLQLNTKGCCLTGVREKYNQQKFQSVANLIPKPVESLF* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3348 418 PIRSF Cyclin_A_B_D_E 1 417 IPR039361 -
Tpr1g3348 418 SUPERFAMILY Cyclin-like 288 411 IPR036915 -
Tpr1g3348 418 Pfam Cyclin, N-terminal domain 160 286 IPR006671 -
Tpr1g3348 418 Gene3D - 174 287 - -
Tpr1g3348 418 CDD CYCLIN 288 380 IPR013763 -
Tpr1g3348 418 Gene3D - 160 408 - -
Tpr1g3348 418 SUPERFAMILY Cyclin-like 150 286 IPR036915 -
Tpr1g3348 418 MobiDBLite consensus disorder prediction 43 72 - -
Tpr1g3348 418 SMART cyclin_7 293 381 IPR013763 -
Tpr1g3348 418 SMART cyclin_7 196 280 IPR013763 -
Tpr1g3348 418 ProSitePatterns Cyclins signature. 191 222 IPR006671 -
Tpr1g3348 418 PANTHER CYCLIN-A2-4 35 418 - -
Tpr1g3348 418 PANTHER CYCLINS 35 418 IPR039361 -
Tpr1g3348 418 SMART Cyclin_C_2 289 412 IPR004367 -
Tpr1g3348 418 MobiDBLite consensus disorder prediction 43 58 - -
Tpr1g3348 418 Pfam Cyclin, C-terminal domain 289 410 IPR004367 -
Tpr1g3348 418 CDD CYCLIN 190 279 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3348 Tpr-Chr1 37866928 37871870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3348 13 418 Core Cell Cycle Gene Families AT5G25380 50.114 8.28e-130 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3348 K06627 - gmx:100777132 493.812