Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3346 ATGAAGCTTAAGGTCATGCAAGTATTAATAGTAATGGTTGCTGCATTAGCCCTGTTGGAAGGCACACTTGCATCTGATGAACCCCAACAAGTCCTACCAGGCTGCAATAACACCTGTGGAGATATACAAATTCCATATCCATTTGGCATAGGATATTCAACACTAGATCATAAACCATGTTACATGGATTCCAAATTTAATCTCACTTGTGTAAACAACTCGACATTAATCCATGGGAATATCACAGTCCTAAACATAACTTCCCAAAGTCAAATGGTAATGAAATTTTTCGTCTCACGTCTCTGTACCGATGGTAATAATAATACTGAAGAAAAAGAAGCCAATCAACCTTTTCTCAACGTTCCTTCTTTCACAATTTCAAGCACGGAAAACAAATTCATAACCGTCGGTTGCGACAGTTACGGGTATCTCGACAGTAATTTCAATGGTGCCACTTATTCAACAGGGTGCTTAACAAGGTGTCCCCGTTATGATTATGATCCTAAAATGGTAAATGGGAACAATACTGGAAAATGCACAGGTTTAGGGTGCTGCCAAGTGGATATTCCTCCACTTATGAAATATATCACTATACAAACATTTAAATTCCCAAATTCTATATCTCAGAAAGGTTGTAGTTATTCCTTTATTGCAAAACAAGGATCCTATAATTTTTCTGTAGACCATATTAATAATCTACCTAATCAAACTTTTCCCATGGTTGTTAACTGGGCCGTTACAAATGAATCATGTGAAATAGCACAAACTACAAATAGCTACGCCTGCAAGGAAAATAGTGAATGTGACGATGATGATGATTTAGATTATGACGGTTACAGATGCAAGTGTTTGGAAGGTTTTGAAGGAAATCCATACCTTCCTGGAGGCTGCAGAGACATTAACGAATGTGCAACAAATTTACATAGATGCAAAGATAGCACAAATTGTAAAAACACTCCAGGGAATCACACTTGTTTCTGTCCAGTAGGCCAAACCGGAGATGGAACAAAGGAAGGAGGGTGCCTACCAATAGTACCTACTGGAGATGAAACCGGGAATGCATATCCAATAGTACCTACTGTCCTTGGAGTAGGAGCAGCATTTATTGTTCTATTTGTGGGGATCATTTCCTTCTTAGTATACCAAAAGAGGAAACTTACCAAATTGAAAGAGAAATTCTTTAGACAGAATGGAGGTTCTATTTTGGAACAGAAACTTCGTCAAAGAAACGACTCATCTCAAGTAGCTAAAATTTTCAAAGAAAATGAACTAAGGAAAGCCACTAACAATTATGACGAGAGCTTAATCATTGGTAGAGGAGGTTTTGGTACAGTTTTCAAAGGAGAACTAGATGATAATAGAATCGTTGCTATCAAAAAGTCGAAAACAATAGATGAAAGCCAAATTGATCAATTCATTAATGAGGTGGATGTTGTCTCCCAAATAAATCACAGGAATGTGGTTAAACTCTTAGGGTGTTGTCTAGAAACAGAAGTTCCTTTGTTGGTTTATGAATTTGTTAGCAATGGTACTCTTTCTGATTTTATACACACAGAAGATAAAGTGAATAAGCCAACTTGGAAAGCTCGTCTTAAGATAGCAGCCGAGGTAGCCGGAGCTTTGTCATATCTACATTCATCGGCCTCGATACCAATTATCCACAGAGATGTCAAGAGTGACAACATTCTCTTAGATGGAACCAACACTGCCAAAGTATCTGATTTTGGAGCTTCAAGATTGGTTCCACTTGATCAAACTGAAATAGCCACAATGGTGCAAGGAACTATTGGCTACTTAGATCCAGAGTATATGCAAACAAGCCAATTGACTGAAAAAAGTGATGTATATAGCTTTGGGGTAGTTCTTGTGGAACTGCTAACAGGGGAGAGACCTTTTAGTTTTGGTAGGCCAGAAGAGAGAAGAAGTCTTGCTATGCATTTTCTGTCATGCCTGAAAAAGGATAATGTGTTTGAAATTATTGAAGATGGTATGTTGAATGAAGAAAACAAACAAGAGATCAAGGAGGTAGCTGTTCTTGCGGCGAAATGTTTGAGACTTAGAGGGGAAGAAAGACCTAGCATGAAGGAGGTGGCTATGGAATTGGAGGGAATGAGGTTAATGGATAAGCACTCTTGGATCAATGATGACTTAAATGTAGAGGAGAATCAGCACTTGCTTCGTGAATCGTCATCTCGCATTTATGAAACTGGTGATAGCAGTAAACATGGAGATATTGGGTATGACAGCTTAAAAGATCATGTATTGATTGCCTTGGATGATGGAAGATGA 2289 0.3823 MKLKVMQVLIVMVAALALLEGTLASDEPQQVLPGCNNTCGDIQIPYPFGIGYSTLDHKPCYMDSKFNLTCVNNSTLIHGNITVLNITSQSQMVMKFFVSRLCTDGNNNTEEKEANQPFLNVPSFTISSTENKFITVGCDSYGYLDSNFNGATYSTGCLTRCPRYDYDPKMVNGNNTGKCTGLGCCQVDIPPLMKYITIQTFKFPNSISQKGCSYSFIAKQGSYNFSVDHINNLPNQTFPMVVNWAVTNESCEIAQTTNSYACKENSECDDDDDLDYDGYRCKCLEGFEGNPYLPGGCRDINECATNLHRCKDSTNCKNTPGNHTCFCPVGQTGDGTKEGGCLPIVPTGDETGNAYPIVPTVLGVGAAFIVLFVGIISFLVYQKRKLTKLKEKFFRQNGGSILEQKLRQRNDSSQVAKIFKENELRKATNNYDESLIIGRGGFGTVFKGELDDNRIVAIKKSKTIDESQIDQFINEVDVVSQINHRNVVKLLGCCLETEVPLLVYEFVSNGTLSDFIHTEDKVNKPTWKARLKIAAEVAGALSYLHSSASIPIIHRDVKSDNILLDGTNTAKVSDFGASRLVPLDQTEIATMVQGTIGYLDPEYMQTSQLTEKSDVYSFGVVLVELLTGERPFSFGRPEERRSLAMHFLSCLKKDNVFEIIEDGMLNEENKQEIKEVAVLAAKCLRLRGEERPSMKEVAMELEGMRLMDKHSWINDDLNVEENQHLLRESSSRIYETGDSSKHGDIGYDSLKDHVLIALDDGR* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3346 762 SMART egf_5 250 298 IPR000742 -
Tpr1g3346 762 SMART egf_5 302 342 IPR000742 -
Tpr1g3346 762 ProSiteProfiles Protein kinase domain profile. 431 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3346 762 Pfam Protein tyrosine and serine/threonine kinase 437 701 IPR001245 GO:0004672|GO:0006468
Tpr1g3346 762 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 21 731 - -
Tpr1g3346 762 CDD STKc_IRAK 437 704 - -
Tpr1g3346 762 ProSitePatterns Protein kinases ATP-binding region signature. 437 460 IPR017441 GO:0005524
Tpr1g3346 762 Pfam Wall-associated receptor kinase galacturonan-binding 35 92 IPR025287 GO:0030247
Tpr1g3346 762 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 21 731 IPR045274 GO:0007166
Tpr1g3346 762 SUPERFAMILY EGF/Laminin 299 334 - -
Tpr1g3346 762 Gene3D Transferase(Phosphotransferase) domain 1 507 725 - -
Tpr1g3346 762 SMART serkin_6 431 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3346 762 Gene3D Plasmodium vivax P25 domain 234 343 - -
Tpr1g3346 762 ProSitePatterns Serine/Threonine protein kinases active-site signature. 552 564 IPR008271 GO:0004672|GO:0006468
Tpr1g3346 762 ProSiteProfiles EGF-like domain profile. 299 337 IPR000742 -
Tpr1g3346 762 SUPERFAMILY Protein kinase-like (PK-like) 413 702 IPR011009 -
Tpr1g3346 762 Gene3D Phosphorylase Kinase; domain 1 396 506 - -
Tpr1g3346 762 SMART egfca_6 299 342 IPR001881 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3346 Tpr-Chr1 37829164 37832324 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3346 9 762 Receptor kinase-like Gene Family AT1G21230 45.241 0.0 589
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Tpr1g3346 PK_Tyr_Ser-Thr 2.3e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3346 - - gmx:106795446 922.539