Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3340 ATGAATTTCAAGGGTGAAACTTATACAACAGGGTGCTCAACAAGCTGTCATAATTATGATCCTAAAATGGTAATTGGGAATAACACTGGAAAATGCACAGGTTTAGGGTGTTGCCAAGTTGATATTCCTCCGCTTATGAGATATCTCACTATACAAACATTTAAATTCCCAAGTTCTACATCTCAGAAAGGTTGTAGCTATTCCTTTATTGCAAAACAAGGATCCTATAATTTTTCTGTACAGCATATAAATAATCTAACAGATCAAACTTTTCCCATGGTTGTTAATTGGGCCGTTACAAATGAATCATGTCAAATAGCACAAACTACAGGTAGCTATGCCTGCAAGGAAAATAGTGAATGCGTTGATAATGATCCAGATTATGACGGTTACAGATGCAAGTGTTTGGAGGGTTTTGAAGGAAATCCATACCTTCCTGGAGGCTGCAGAGACGTCGACGAATGTGTAAAAAATTTACATGAATGCAAAAATAGCACAAATTGTAAAAACACAGCTGGGAATTACACTTGTTTCTGTCCTGTGGGCCAAATGGGAGATGGGACAAAGGAAGGAGGGTGCCAACTACATGATGGAAATGCATTTGGAATAGTACCTACTTTGTTCAGAGGAGTAGGAGCAGCATTAGTACATACTGCCCTTGGAATAGGAGCAACATGTATTGTTGTTTTTGTGGGGCAGATGATAATCTCCAAATTGAAAGAGAAATTCTTTAGGCAGAATCAAGGTTCTATTTTGGAACAGAAACTACTTCAAAGAAAAGACTCGTCTAAAATAGCTAATATTTTCAAGGAAAATGAACTAAGGAAAGCCACTAACAACTATGTTGAGAGCTTAATCATAGGTAGAGGAAGTTTTGGTACAGTTTTCAAAGGGGTACTAGAAGATAACAGAATTGTTGCTATCAAAAAGTCCAAAACAATAGATCAAAGCCAAATTGATCAATTCATTAATGAGGTGGATGTTGTGTCCCAAATAAATCACAGGAATGTGGTTAAACTCTTGGGGTGTTGTCTAGAAACAGAAGTTCCTCTGTTGGTTTATGAATTTGTTAGCAATGGTACTCTTTCTGATTTTATACACAAAAATAAAGAGAATAATCCAACTTGGGAAATTCGTCTTAGGATAGCAACAGAGGTAGCTGGAGCTTTGTCATATCTACATTCAGCTGCTTCGATGCCCATTATCCACAGAGATGTCAAGAGTGCTAACATTCTCTTAGATGGAACCAACACTGCCAAAGTATCTGATTTTGGAGCTTCAAAATTAGTACCACTTGACCAATCTGAAATATCCACAAAGGTGCAAGGAACTATTGGCTACTTAGATCCAGAATATATGCAAACAAGCCAATTGACTGAAAAAAGTGATGTATATAGCTTTGGGGTAGTTGTTGTGGAGCTTCTAACAGGGGAGAGACCTTTTAGTATTGCTAGGCCAGAAGAGACAAGAAATCTTGCTAAGCATTTTCTTTCCTGCTTGAAAAAGGATAATGTGTTTGAAATTATTCAAGATGGTATGTTGAATGAAGAAAACAAACAAGAGATCAAGGAGGTAGCTGTTCTTGCGGCAAAGTGTTTGAGACTAAAAGGGGAGAAAAGACCAAGCATGAAGGAAGTGGCTATGGAATTGGAGGGAATGAGGTTAATGGAGAAGCACTCTTCGACCAACGAAGACCTAAATGAATCATTATCTAACATTTATGAACTTGAATTCAAGGCAATGCATTTTCCAGTAATAATGCTTACTGCATTATCCATGTTGGTTGAAGCAGTTGTATCTGATGAACCCCAACAAGTCCTACCAGGCTGCAATTACACTTGTGGAGATATACAAATTCCATATCCATTTGGCATAGGAAATTCAACAACACTAGATCATACAACATGTTACATGGATTCAAAGTTTGAATTTGAACTAACTTGTGTAAACTCAACATTAATCCGTGGTGAGAATATACAAGTCCTAAACATAAATCCTCAAGGTCAAATGGTAATGAAATTTTTTGTCTCGCATCTTTGTACTGATAGTAATAGTAATAATACTGAAAAAGCCAATAAACCTTTTCTCAGAGATCCCTCTTTCACAATTTCAAGCACGGAAAACAAATTCATAACCGTTGGTTGCGACAGTTATGGATATCTCAACAGTAATTTCAAGGGTGCCACTTATTCAACAGGGTGCTTAACAAGATGTTATGATTATGAACCTAAAATGGTAAATGGGACCAATACTGGAAAATGCACAGGTTTAGGTTGCTGCCAAGTCGATATTCCTTCGCTTATGAAAAATATTACTATTCAAACATTTAGATTCCCAACTTCTACACTATCTCAGGATCAGGAAGATTGTAGTTATTCCTTTATTGCAAAACAAGGATCCTATAATTTTTCTGTAGACCATATTAATAATCTACCCAACCAATCTTTCCCCTTGGTTGTTAATTGGGCTATTACAAGTGAATCATGCCTAATAGCACAAACTACAAATAGCTATGCCTGCAAGGAAAATAGTGAATGTGTCGATGATGATTTTGATTATGACGGTTACAGATGCAAGTGTTTGGAAGGTTTTGAAGGAAATCCATACCTTCCTGGAGGCTGCAGAGACATTGACGAATGTGCAACAAATTTACATAGATGCAAAGATAGCACAAATTGTAACAACACTCCAGGGAATCACACTTGTTTCTGTCCAGTAGGCCAAACCGGAAATGGAACAAAGGAAGGAGGGTGCCAACTACCTAATGGAAATGCATATCCAATAGTACCTACTGTCCTTGGAGTAGGAGCAGCATTTATTGTTCTATTTGTGGGGATAATTTTCATCTTAATATACCAAAAGAGGAAACTTACCAAATTGAAAGAGAAATTCTTTAGGCAGAATGGAGGTTCTATTTTGGAACAGAAACTTCTTCAAAGAAAAGACTCATCTCAAATTGCTAATATTTTCAAAGAAAATGAACTAAGGAAAGCCACTAACAACTATGACGAGAGCTTAATCATCGGTAGAGGAGGTTTTGGTACAGTTTTCAAAGGAGAACTAGATGATCATAGAATTGTTGCTATCAAAAAGTCGAAAACAATAGATGAAAGCCAAATTGAGCAATTCATTAATGAGGTGGATGTTGTCTCCCAAATAAATCACAGGAATGTGGTTAAACTCTTAGGGTGTTGTCTAGAAACAGAAGTTCCTTTGTTGGTTTATGAATTTGTTAGCAATGGTACTCTTTCTGATTTTATACACACAGAAGGTAAAGTGAATAATACAACATGGAAACTTCGTCTTAAGATAGCAGCAGAAGTAGCCGGAGCTTTGTCATATCTACATTCAGCGGCCTCGATACCAATTATCCACAGAGATGTCAAGAGTGATAACATTCTCTTAGATGGAACAAACACTGCCAAAGTATCTGATTTTGGAGCTTCAAGATTGGTTCCACTCGACCAAACTGAAATAGCCACAATGGTGCAAGGAACTATTGGCTACTTAGATCCAGAGTATATGCAAACAAGCCAATTGACTGAAAAAAGTGATGTATATAGCTTTGGGGTAGTTCTTGTGGAGCTGTTAACCGGGGAGCGGCCTTTTAGTTTTGGTAGGCCAGAAGAGAGAAGAAGTCTTGCTATGCATTTTCTGTCCTGCTTGAAAAAGGATAGCGTGTTCGATGTCATTCAAGAAGGTATGTTGAATGAAGAAAACAAACAAGAGATCAAGGAGGTAGCTGTTCTAGCGGCAAAGTGTTTGAGACTTAGAGGGGAAGAAAGACCTAGCATGAAGGAAGTGGCTATGGAATTGGAGGGAATGAGGTTAATGGATAAGCATTCTTGGATCAACGAAGACCTAAATGTAGAGGAGAGTCGCTACTTGCTTCATGAATCATCGTCTAGCATTTATGAACTTGGTGATAGCAGCAAACATGGAGATATTGGGTATGACAGCTTGAAAGATCATGTATTGATTGCCTTGGATGATGGAAGATGA 4002 0.3761 MNFKGETYTTGCSTSCHNYDPKMVIGNNTGKCTGLGCCQVDIPPLMRYLTIQTFKFPSSTSQKGCSYSFIAKQGSYNFSVQHINNLTDQTFPMVVNWAVTNESCQIAQTTGSYACKENSECVDNDPDYDGYRCKCLEGFEGNPYLPGGCRDVDECVKNLHECKNSTNCKNTAGNYTCFCPVGQMGDGTKEGGCQLHDGNAFGIVPTLFRGVGAALVHTALGIGATCIVVFVGQMIISKLKEKFFRQNQGSILEQKLLQRKDSSKIANIFKENELRKATNNYVESLIIGRGSFGTVFKGVLEDNRIVAIKKSKTIDQSQIDQFINEVDVVSQINHRNVVKLLGCCLETEVPLLVYEFVSNGTLSDFIHKNKENNPTWEIRLRIATEVAGALSYLHSAASMPIIHRDVKSANILLDGTNTAKVSDFGASKLVPLDQSEISTKVQGTIGYLDPEYMQTSQLTEKSDVYSFGVVVVELLTGERPFSIARPEETRNLAKHFLSCLKKDNVFEIIQDGMLNEENKQEIKEVAVLAAKCLRLKGEKRPSMKEVAMELEGMRLMEKHSSTNEDLNESLSNIYELEFKAMHFPVIMLTALSMLVEAVVSDEPQQVLPGCNYTCGDIQIPYPFGIGNSTTLDHTTCYMDSKFEFELTCVNSTLIRGENIQVLNINPQGQMVMKFFVSHLCTDSNSNNTEKANKPFLRDPSFTISSTENKFITVGCDSYGYLNSNFKGATYSTGCLTRCYDYEPKMVNGTNTGKCTGLGCCQVDIPSLMKNITIQTFRFPTSTLSQDQEDCSYSFIAKQGSYNFSVDHINNLPNQSFPLVVNWAITSESCLIAQTTNSYACKENSECVDDDFDYDGYRCKCLEGFEGNPYLPGGCRDIDECATNLHRCKDSTNCNNTPGNHTCFCPVGQTGNGTKEGGCQLPNGNAYPIVPTVLGVGAAFIVLFVGIIFILIYQKRKLTKLKEKFFRQNGGSILEQKLLQRKDSSQIANIFKENELRKATNNYDESLIIGRGGFGTVFKGELDDHRIVAIKKSKTIDESQIEQFINEVDVVSQINHRNVVKLLGCCLETEVPLLVYEFVSNGTLSDFIHTEGKVNNTTWKLRLKIAAEVAGALSYLHSAASIPIIHRDVKSDNILLDGTNTAKVSDFGASRLVPLDQTEIATMVQGTIGYLDPEYMQTSQLTEKSDVYSFGVVLVELLTGERPFSFGRPEERRSLAMHFLSCLKKDSVFDVIQEGMLNEENKQEIKEVAVLAAKCLRLRGEERPSMKEVAMELEGMRLMDKHSWINEDLNVEESRYLLHESSSSIYELGDSSKHGDIGYDSLKDHVLIALDDGR* 1334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3340 1333 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1123 1135 IPR008271 GO:0004672|GO:0006468
Tpr1g3340 1333 ProSiteProfiles EGF-like domain profile. 151 189 IPR000742 -
Tpr1g3340 1333 SMART serkin_6 281 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3340 1333 SMART serkin_6 1002 1284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3340 1333 ProSitePatterns Protein kinases ATP-binding region signature. 287 310 IPR017441 GO:0005524
Tpr1g3340 1333 ProSitePatterns Calcium-binding EGF-like domain signature. 151 177 IPR018097 GO:0005509
Tpr1g3340 1333 SUPERFAMILY EGF/Laminin 151 186 - -
Tpr1g3340 1333 SUPERFAMILY Protein kinase-like (PK-like) 985 1273 IPR011009 -
Tpr1g3340 1333 ProSitePatterns Protein kinases ATP-binding region signature. 1008 1031 IPR017441 GO:0005524
Tpr1g3340 1333 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 595 1302 IPR045274 GO:0007166
Tpr1g3340 1333 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 5 574 IPR045274 GO:0007166
Tpr1g3340 1333 ProSiteProfiles EGF-like domain profile. 876 919 IPR000742 -
Tpr1g3340 1333 Gene3D Plasmodium vivax P25 domain 94 199 - -
Tpr1g3340 1333 Gene3D Phosphorylase Kinase; domain 1 242 356 - -
Tpr1g3340 1333 Gene3D Phosphorylase Kinase; domain 1 967 1077 - -
Tpr1g3340 1333 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 595 1302 - -
Tpr1g3340 1333 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 5 574 - -
Tpr1g3340 1333 ProSiteProfiles Protein kinase domain profile. 281 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3340 1333 ProSiteProfiles Protein kinase domain profile. 1002 1284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3340 1333 Gene3D Transferase(Phosphotransferase) domain 1 1078 1295 - -
Tpr1g3340 1333 Gene3D Transferase(Phosphotransferase) domain 1 357 577 - -
Tpr1g3340 1333 CDD STKc_IRAK 287 553 - -
Tpr1g3340 1333 Gene3D Laminin 828 918 - -
Tpr1g3340 1333 CDD STKc_IRAK 1008 1275 - -
Tpr1g3340 1333 Pfam Calcium-binding EGF domain 876 918 IPR001881 GO:0005509
Tpr1g3340 1333 Pfam Calcium-binding EGF domain 151 184 IPR001881 GO:0005509
Tpr1g3340 1333 SMART egfca_6 876 919 IPR001881 GO:0005509
Tpr1g3340 1333 SMART egfca_6 151 194 IPR001881 GO:0005509
Tpr1g3340 1333 ProSitePatterns Serine/Threonine protein kinases active-site signature. 401 413 IPR008271 GO:0004672|GO:0006468
Tpr1g3340 1333 Pfam Wall-associated receptor kinase galacturonan-binding 610 670 IPR025287 GO:0030247
Tpr1g3340 1333 SUPERFAMILY EGF/Laminin 876 911 - -
Tpr1g3340 1333 SUPERFAMILY Protein kinase-like (PK-like) 264 551 IPR011009 -
Tpr1g3340 1333 Pfam Protein tyrosine and serine/threonine kinase 286 550 IPR001245 GO:0004672|GO:0006468
Tpr1g3340 1333 Pfam Protein tyrosine and serine/threonine kinase 1008 1272 IPR001245 GO:0004672|GO:0006468
Tpr1g3340 1333 SMART egf_5 879 919 IPR000742 -
Tpr1g3340 1333 SMART egf_5 828 875 IPR000742 -
Tpr1g3340 1333 SMART egf_5 103 150 IPR000742 -
Tpr1g3340 1333 SMART egf_5 154 194 IPR000742 -
Tpr1g3340 1333 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 168 179 IPR000152 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3340 Tpr-Chr1 37707294 37718410 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3340 3 564 Receptor kinase-like Gene Family AT1G21230 46.007 1.66e-161 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Tpr1g3340 PK_Tyr_Ser-Thr 1.4e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3340 - - jre:108980353 1270.37