Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3339 ATGCTTGTTGCATTCTTCCTGTTGGTAGAAGCAGTTGCATCTGATGAACCCCAACAAGCCCTACCAGGCTGCAATAACACTTGTGGAGATATACTAGTTCCATATCCATTTGGCATGGGACATTCAACAACACAAGATAATACACCCTGTTACATGGATTCTAAATTTGAGCTCAAATGCATAAAATCAAAATTAACCTATGGTAAAATGATCCCAGTCCTAGACATAAATCCCCAAAGTCAAATGGTAATGAAATTTTTCGTCTCACGCGTCTGTACTAACAGTAGTAGTAGTAATAATACTGAAGAAGCGAATGAACCTCTTCTCAACGTTTCTTCTTTCACAATTTCAAGCACGGAAAACAAATTCATAACCGTTAGTTGCGACGGTTATGGAATTCTCAACAGTAATTTCAAGAATGCAACTTATTCAATAGGGTGCTTAACAAGATGTCATAATTATGACCATAAAATGGTAATTGGGAATAACATTGGAAAATGCACAGGTTTAGGGTGTTGCCAAGTGGATATTCCTCCACTTATGAAAAATATCACTATACAAACATTTAAATTCCCACCAGAAATAACCACCCAGGAAGATTGTAGCTATTCCTTTATTGCAAAACAAGGATCCTATAATTTTTCTGTAGACCATATAAATAATCTAACTAATCAAACTTTTCCCATGGTTGTTAACTGGGCCGTTACAAATGAATCATGTCAAATAGCAAAAACTACAGATAGCTATGCCTGCAGGGAAAATAGTGAATGTGTCGATAATGATCCAGATTATGAAGGTTACAGATGCAAGTGTTTGGAAGGTTTTGAAGGAAATCCATACCTTCCTGGAGGCTGCACAGACATTGACGAATGTGCAAAAAATTTACATGGATGCAAAAATAGCGCAAATTGCATCAACACTGCTGGGAATTACACTTGTTTCTGTCCTGTGGGGCAAACCGGTGATGGAACAAAGGAAGGAGGGTGCAAACTACCTGATAGAAAAACATATAAATATGTTATTATTGGACCAATACTTTTTCTTGTTATTGTGGGGATAATTTCCTTCTTTGTATACCAAAAGAGGAAATATACCAAATTGAAAGCGAAATTCTTTAGGAAGAATGGAGGTTCTATTTTAGAACAGAAACTTCTCCAAAGAAAAGACTCATCTATAATAGCTAATGTTTTCAAAGAAAGTGAACTAAGGAAAGCGACTAAGAACTATGATGAGAACTTAGTCATAGGTAGAGGAAGTTTTGGTAAAGTTTTCAAAGGGGAACTAGAAGATAATAGAATTGTTGCTATCAAAATGTCGAAAACAATAGATGAAAGCCAAATTGAGCAATTCATTAATGAGGTGGATGTTGTATCCCAAATAAATCACAGGAATGTGGTTAAACTCTTGGGGTGTTGTCTAGAAACAGAAGTTCCTTTGTTGGTTTATGAATTCGTCAGCAATGGTACTCTTTCTGATTTTATACACACAAATTTAGAGAATAATCCAACTTGGAAAATTCGTCTTAAGATAGCAACAGAGGTAGCTGGAGCTTTGTCATATCTACATTCAGCTGCTTCAATACCAATTATCCACAGAGATATCAAGAGTGCTAACATTCTCTTAGATGAAGACAACACTGCCAAAGTAGCTGATTTTGGAGCTTCAAAATTAGTACCACTTGACCAATCTGAAATAGCCACAATGGTGAAAGGAACTATTGGTTACTTAGACCCAGAGTATATGCTCACGAGCCAATTGACGGAAAAAAGTGATGTATATAGCTTTGGGGTAGTTCTTGTGGAGCTGCTAACAGGGGAGAGACCTTTTAGTTTTGGTAGGCCAGAAGAGAGAAGAAATCTTGCTACATATTTTCTGTCCTGCTTCAAAAAGGATAACGTGTTTGAAATTATTGAAGATGGTATGTTGAATGAAGAAAACAAACAAGAGATAAAGGAGGTAACTGATCTTGCGGCAAAGTGTTTGAGACTAAGAGGGAAGGAAAGACCAAGCATGAAGGAAGTGGCTATGGAATTGGAAACAATGATCTTAAATGTAGAGGGGAATCAGGCAACGAAACTTAAGGCAATGCATCCATTAATAATGCTTGTTGCATTCTTCCTGTTGGTAGAAGCAGTTGCATCTGATGAACCCCAACAAGCCCTACCAGGCTGCAATAACACTTGTGGAGATATACTAGTTCCATATCCATTTGGCATGGGACATTCAACAACACAAGATAATACACCCTGTTACATGGATTCTAAATTTGAGCTCAAATGCATAAAATCAAAATTAACCTATGGTAAAATGATCCCAGTCCTAGACATAAATCCCCAAAGTCAAATGGTAATGAAATTTTTCGGCTCACGCGTCTGTACTAATAGTAGTAGTAGTAATAATACTGAAGAAGCGAATGAACCTCTTCTCAACGTTTCTTCTTTCACAATTTCAAGCACGGAAAACAAATTCATAACCGTTAGTTGCGACGGTTATGGAATTCTCAACAGTAATTTCAAGAATGCAACTTATTCAATAGGGTGCTTAACAAGATGTCATAATTATGACCATAAAATGGTAATTGGGAATAACATTGGAAAATGCACAGGTTTAGGGTGTTGCCAAGTGGATATTCCTCCACTTATGAAAAATATCACTATACAAACATTTAAATTCCCACCAGAAACAACCACCCAGGAAGATTGTAGCTATTCCTTTATTGCAAAACAAGGATCCTATAATTTTTCTGTAGACCATATAAATAATCTAACTAATCAAACTTTTCCCATGGTTGTTAACTGGGCCGTTACAAATGAATCATGTCAAATAGCAAAAACTACAGATAGCTATGCCTGCAGGGAAAATAGTGAATGTGTCGATAATGATCCAGATTATGAAGGTTACAGATGCAAGTGTTTGGAAGGTTTTGAAGGAAATCCATACCTTCCTGGAGGCTGCACAGACATTGACGAATGCGCAAAAAATTTACATGGATGCAAAAATAGCGCAAATTGCATCAACACTGCTGGGAATTACACTTGTTTCTGTCCTTTGGGGCAAACAGGTGATGGAACAAAGGAACGAGGGTGCAAACTACCTGATAGAAAAGCATATATATATGTTATTGGAGTAATACTTTTTCTTGTTAATGTGTGGATAATTTACTCCTTATACCAAAAGAGGAAACATACCAAATTGAAAGGGAAATTCTTTAGGAAGAATGGAGGTTCTATTTTAGAACAGAAACTTCTCCAAAGAAAAGACTCGTCTAAAATAGCTAATATTTTCAAAGAAAGTGAGCTAAGGAAAGCCACAAACAACTACGATGAGAGCTTAATCATAGGTAGAGGAAGTTTTGGTACAGTTTTCAAAGGGGAACTAGAAGATAATAGAATTGTTGCTATCAAAATGTCGAAAACAATAGATGAAAGCCAAATTGAGCAATTCATTAATGAGGTGGATGTTGTCTCCCAAATAAATCACAGGAATGTGGTTAAACTCTTGGGGTGTTGTCTAGAAACAGAAGTTCCTTTGTTGGTTTACGAATTCGTCAGCAATGGTACTCTTTCTGATTTTATACACACAGATAAATTGAATAATCCAACTTGGAAGATTCGTCTTAAGATAGCAACAGAGGTAGCTGGAGCTTTGTCATATCTACATTCAGCTGCTTCAATACCCATTATCCACAGAGATGTCAAGAGTGCTAACATTCTCTTAGATGGAACCAACACTGCCAAAGTATCTGATTTTGGAGCTTCAAAATTAGTACCACTTGACCAATCTGAAATAGCCACAATGGTGAAAGGAACTATTGGCTACTTAGATCCAGAGTATATGCTAACAAACCAATTGACCGAAAAAAGTGATGTTTATAGCTTTGGGGTAGTTGTTGTGGAGCTGCTGACAGGGGAGAGACCTTTTAGTTTTGGTAGGCCAGAAGAGAGAAGAAATCTTGCTACATATTTTCTGTCCTGCTTCAAAAAGGATAATGTGTTTGAAATTATTGAAGATGGTTTGTTGAATGAAGAAAACAAACAAGAGATCAAGGAGGTAACTGATCTTGCAGCAAAGTGTTTGAGACTAAGAGGGGAGGAAAGACCAAGCATGAAGGAAGTGGCTATGGAATTGGAAACAATGATCTTAAATGCAGAGGGGAATCGATAG 4164 0.3686 MLVAFFLLVEAVASDEPQQALPGCNNTCGDILVPYPFGMGHSTTQDNTPCYMDSKFELKCIKSKLTYGKMIPVLDINPQSQMVMKFFVSRVCTNSSSSNNTEEANEPLLNVSSFTISSTENKFITVSCDGYGILNSNFKNATYSIGCLTRCHNYDHKMVIGNNIGKCTGLGCCQVDIPPLMKNITIQTFKFPPEITTQEDCSYSFIAKQGSYNFSVDHINNLTNQTFPMVVNWAVTNESCQIAKTTDSYACRENSECVDNDPDYEGYRCKCLEGFEGNPYLPGGCTDIDECAKNLHGCKNSANCINTAGNYTCFCPVGQTGDGTKEGGCKLPDRKTYKYVIIGPILFLVIVGIISFFVYQKRKYTKLKAKFFRKNGGSILEQKLLQRKDSSIIANVFKESELRKATKNYDENLVIGRGSFGKVFKGELEDNRIVAIKMSKTIDESQIEQFINEVDVVSQINHRNVVKLLGCCLETEVPLLVYEFVSNGTLSDFIHTNLENNPTWKIRLKIATEVAGALSYLHSAASIPIIHRDIKSANILLDEDNTAKVADFGASKLVPLDQSEIATMVKGTIGYLDPEYMLTSQLTEKSDVYSFGVVLVELLTGERPFSFGRPEERRNLATYFLSCFKKDNVFEIIEDGMLNEENKQEIKEVTDLAAKCLRLRGKERPSMKEVAMELETMILNVEGNQATKLKAMHPLIMLVAFFLLVEAVASDEPQQALPGCNNTCGDILVPYPFGMGHSTTQDNTPCYMDSKFELKCIKSKLTYGKMIPVLDINPQSQMVMKFFGSRVCTNSSSSNNTEEANEPLLNVSSFTISSTENKFITVSCDGYGILNSNFKNATYSIGCLTRCHNYDHKMVIGNNIGKCTGLGCCQVDIPPLMKNITIQTFKFPPETTTQEDCSYSFIAKQGSYNFSVDHINNLTNQTFPMVVNWAVTNESCQIAKTTDSYACRENSECVDNDPDYEGYRCKCLEGFEGNPYLPGGCTDIDECAKNLHGCKNSANCINTAGNYTCFCPLGQTGDGTKERGCKLPDRKAYIYVIGVILFLVNVWIIYSLYQKRKHTKLKGKFFRKNGGSILEQKLLQRKDSSKIANIFKESELRKATNNYDESLIIGRGSFGTVFKGELEDNRIVAIKMSKTIDESQIEQFINEVDVVSQINHRNVVKLLGCCLETEVPLLVYEFVSNGTLSDFIHTDKLNNPTWKIRLKIATEVAGALSYLHSAASIPIIHRDVKSANILLDGTNTAKVSDFGASKLVPLDQSEIATMVKGTIGYLDPEYMLTNQLTEKSDVYSFGVVVVELLTGERPFSFGRPEERRNLATYFLSCFKKDNVFEIIEDGLLNEENKQEIKEVTDLAAKCLRLRGEERPSMKEVAMELETMILNAEGNR* 1388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3339 1387 Gene3D Phosphorylase Kinase; domain 1 375 484 - -
Tpr1g3339 1387 Gene3D Phosphorylase Kinase; domain 1 1072 1182 - -
Tpr1g3339 1387 ProSitePatterns Calcium-binding EGF-like domain signature. 287 313 IPR018097 GO:0005509
Tpr1g3339 1387 ProSiteProfiles Protein kinase domain profile. 409 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3339 1387 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 9 686 - -
Tpr1g3339 1387 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 703 1379 - -
Tpr1g3339 1387 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 703 1379 IPR045274 GO:0007166
Tpr1g3339 1387 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 9 686 IPR045274 GO:0007166
Tpr1g3339 1387 Pfam Calcium-binding EGF domain 287 324 IPR001881 GO:0005509
Tpr1g3339 1387 Pfam Calcium-binding EGF domain 987 1023 IPR001881 GO:0005509
Tpr1g3339 1387 SMART serkin_6 409 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3339 1387 SMART serkin_6 1107 1380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3339 1387 Gene3D Laminin 989 1026 - -
Tpr1g3339 1387 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 304 315 IPR000152 -
Tpr1g3339 1387 SMART egfca_6 987 1030 IPR001881 GO:0005509
Tpr1g3339 1387 SMART egfca_6 287 330 IPR001881 GO:0005509
Tpr1g3339 1387 CDD EGF_CA 287 322 - -
Tpr1g3339 1387 SMART egf_5 290 330 IPR000742 -
Tpr1g3339 1387 SMART egf_5 239 286 IPR000742 -
Tpr1g3339 1387 SMART egf_5 990 1030 IPR000742 -
Tpr1g3339 1387 SMART egf_5 939 986 IPR000742 -
Tpr1g3339 1387 ProSiteProfiles EGF-like domain profile. 287 325 IPR000742 -
Tpr1g3339 1387 ProSitePatterns Protein kinases ATP-binding region signature. 415 437 IPR017441 GO:0005524
Tpr1g3339 1387 Gene3D Transferase(Phosphotransferase) domain 1 1183 1386 - -
Tpr1g3339 1387 Gene3D Transferase(Phosphotransferase) domain 1 485 697 - -
Tpr1g3339 1387 Pfam Protein tyrosine and serine/threonine kinase 414 678 IPR001245 GO:0004672|GO:0006468
Tpr1g3339 1387 Pfam Protein tyrosine and serine/threonine kinase 1113 1376 IPR001245 GO:0004672|GO:0006468
Tpr1g3339 1387 CDD STKc_IRAK 415 679 - -
Tpr1g3339 1387 Gene3D Laminin 238 290 - -
Tpr1g3339 1387 Gene3D Laminin 938 988 - -
Tpr1g3339 1387 CDD STKc_IRAK 1113 1377 - -
Tpr1g3339 1387 SUPERFAMILY Protein kinase-like (PK-like) 391 679 IPR011009 -
Tpr1g3339 1387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1227 1239 IPR008271 GO:0004672|GO:0006468
Tpr1g3339 1387 ProSitePatterns Protein kinases ATP-binding region signature. 1113 1135 IPR017441 GO:0005524
Tpr1g3339 1387 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 1004 1015 IPR000152 -
Tpr1g3339 1387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 529 541 IPR008271 GO:0004672|GO:0006468
Tpr1g3339 1387 Pfam Wall-associated receptor kinase galacturonan-binding 724 782 IPR025287 GO:0030247
Tpr1g3339 1387 Pfam Wall-associated receptor kinase galacturonan-binding 24 82 IPR025287 GO:0030247
Tpr1g3339 1387 ProSiteProfiles Protein kinase domain profile. 1107 1380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3339 1387 SUPERFAMILY EGF/Laminin 987 1022 - -
Tpr1g3339 1387 SUPERFAMILY Protein kinase-like (PK-like) 1090 1377 IPR011009 -
Tpr1g3339 1387 ProSitePatterns Calcium-binding EGF-like domain signature. 987 1013 IPR018097 GO:0005509
Tpr1g3339 1387 ProSiteProfiles EGF-like domain profile. 987 1025 IPR000742 -
Tpr1g3339 1387 SUPERFAMILY EGF/Laminin 287 322 - -
Tpr1g3339 1387 Gene3D Laminin 291 326 - -
Tpr1g3339 1387 CDD EGF_CA 987 1022 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3339 Tpr-Chr1 37696669 37704110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3339 1 691 Receptor kinase-like Gene Family AT1G21230 43.362 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Tpr1g3339 PK_Tyr_Ser-Thr 1.1e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3339 - - vri:117906993 1264.98