Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3338 ATGGATTCAACACGCACCAAAGCACAAAACTCAGTTACGGAAGGCGAAATTAACGAAGTTGTCGAAGTTAGGCGACCTGTTGTGCTTGGCCTTTTTGCAACGGGCATTGTTCCAGCTGGTCAACCAAGAAGTCCTCCTAATGTGCCGCAGCCGATAGAAATTGACACATCGTCTCATTTTGCGACTGATAGGGAAGAGAACGACAGAGATGAGTTGATCAAATGGGCTCGAAGCGTGTCGCAAAGTTTAAGGTTCGCAATTATAGTTAGGCGATCCGATTCGGGCGAGAAGAGAAAGGCTCAATTGGTGTTAGAGTGTGAACGTAGTGGGAAGTATGTTCCAGCCAAGAAGAAGTTGAAATCCGATACCTCCGGAACAAGAAAATGCGAATGTCCTTTCCGACTCCGTGGGTATTACAACAAGGCAACAAAACTATGGCGTTTGACTGTTGTCAACGGTATGCATAACCACGAGTTGGACAAAGGGCTTGAAGGGCATCTCGTGGCGGGGCGTTTGAAACCACAAGAGAAGGATTTTATGGACGAGATGACAAGGAATGCGGTGGCTCCAAAAAACATATTGTCCACATTAAAGGAGAGAGATCCGGAAAACAAGACCTCTGCAAAGCAAGTGTACAACGCTCGTCATAGGTACAGAGTTAAAATGAGGGCGTCCATGACTGAGATGCAACACTTATGCAAGAAGCTTGATGATAACAAGTACTACTACAAGTATCGGACGGTTGTTGAAAATGGAGTAGAACATCTTCAAGATATATTCTTTGCACATCCGAGGTCCATAACTTTATTGAACTCTTTTCATACTGTGCTGATGATGGACTCCACATACAAAACCAGCAAGTACAAAATGCCGCTGTTTGAAATAGTCGGATACACTTCGACCGAGAAGACATTCAACGTTGCTTTTGCCTGGCTCAGTAACGAAAAGGAAGACAACTTTATATGGGCTCTGCAACAACTACGTTGTTTGTTAAGGCGTGAGACAAATTTGCCGAAGGTTATCTTGACGGATCGAGATTTAGCTTTGATGAATGCTATTCCGGCTGTGTTTCCAGAAGCGGCGGCGTTGGTTTGTCGGTTCCATGTTAAGAAGAATGTGAGGACCAAGGCAGCCGAGCTGGTCAAGGAAGTTATGTGA 1158 0.4499 MDSTRTKAQNSVTEGEINEVVEVRRPVVLGLFATGIVPAGQPRSPPNVPQPIEIDTSSHFATDREENDRDELIKWARSVSQSLRFAIIVRRSDSGEKRKAQLVLECERSGKYVPAKKKLKSDTSGTRKCECPFRLRGYYNKATKLWRLTVVNGMHNHELDKGLEGHLVAGRLKPQEKDFMDEMTRNAVAPKNILSTLKERDPENKTSAKQVYNARHRYRVKMRASMTEMQHLCKKLDDNKYYYKYRTVVENGVEHLQDIFFAHPRSITLLNSFHTVLMMDSTYKTSKYKMPLFEIVGYTSTEKTFNVAFAWLSNEKEDNFIWALQQLRCLLRRETNLPKVILTDRDLALMNAIPAVFPEAAALVCRFHVKKNVRTKAAELVKEVM* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3338 385 Pfam MULE transposase domain 276 372 IPR018289 -
Tpr1g3338 385 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 102 373 IPR031052 GO:0006355
Tpr1g3338 385 Pfam Transcription factor AFT 108 159 IPR014842 GO:0000981|GO:0036086
Tpr1g3338 385 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE ISOFORM X1 102 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3338 Tpr-Chr1 37693396 37695000 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tpr1g3338 MULE 3.2e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3338 - - vun:114181823 316.62