Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3334 ATGGGTGAGGTGGCAGTGTTGCACTCCGAACCTCTGCACTTCGAATGCAATGACACGAAACATATGATAGAAGAAGACGCTTATCCTGCAAAATCAAATCCGGAATCCTTTCCTGGAGAAGAATGTCAGTCTATAAACAAAAATGATTTGCAAGATAAAGGATATATGGAATATGGATGCCAACATTACCGTAGAAGATGCCGAATCAGGGCCCCCTGTTGCAATGAGATTTTTGATTGCCGCCATTGTCACAATGAGGCGAAAAATGATATCAATGTAGATTATAAGCATAGACATGACATGCCTCGACACCAAGTCAAACAGGTGATATGTTCACTTTGTGGGACTGAACAAGAGGTTCAGCAAAACTGTATTAATTGTGGTGTTTGCATGGGCAAGTACTTCTGTGAGACATGCAAGCTCTATGACGATGATATATCTAAGCAGCAGTACCATTGTAATGGCTGTGGAATTTGCAGAACTGGTGGACACGAGAATTTCTTCCATTGTAATAAGTGTGGTTGTTGCTACTCAACTCTGCTGAAAAACAGTCACCCCTGTGTGGAAGGAGCAATGCATCATGATTGCCCCGTTTGTTTTGAGTATTTGTTTGAATCAAGAAATGATGTCATTGTTATGCCATGCGGACATACAATCCATAAAAGCTGTCTGAATGAAATGAGAGAACATTACCAGTACTCATGCCCTCTCTGTTCGAAGTCAGTCTGTGATATGTCAAAGGTTTGGGAGAAATTGGACATGGAGATTGCTGCTACGCCAATGCCTGAACCATATCAAAATAAAATGGTCTGGATCCTGTGCAATGACTGCGGACAAACTTCTCATGTTCGGTTCCATTTCGTAGCTCAAAAATGCCTCAACTGCAAATCCTATAACACTCGACAGACGAGAGGATGA 918 0.4183 MGEVAVLHSEPLHFECNDTKHMIEEDAYPAKSNPESFPGEECQSINKNDLQDKGYMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNDINVDYKHRHDMPRHQVKQVICSLCGTEQEVQQNCINCGVCMGKYFCETCKLYDDDISKQQYHCNGCGICRTGGHENFFHCNKCGCCYSTLLKNSHPCVEGAMHHDCPVCFEYLFESRNDVIVMPCGHTIHKSCLNEMREHYQYSCPLCSKSVCDMSKVWEKLDMEIAATPMPEPYQNKMVWILCNDCGQTSHVRFHFVAQKCLNCKSYNTRQTRG* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3334 305 Pfam CHY zinc finger 60 141 IPR008913 GO:0008270
Tpr1g3334 305 ProSiteProfiles Zinc finger RING-type profile. 196 239 IPR001841 -
Tpr1g3334 305 SUPERFAMILY RING/U-box 195 243 - -
Tpr1g3334 305 Gene3D - 267 305 - -
Tpr1g3334 305 SMART ring_2 196 238 IPR001841 -
Tpr1g3334 305 ProSiteProfiles Zinc finger CTCHY-type profile. 131 195 IPR017921 -
Tpr1g3334 305 SUPERFAMILY CHY zinc finger-like 57 131 IPR037274 GO:0008270
Tpr1g3334 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 241 IPR013083 -
Tpr1g3334 305 ProSiteProfiles Zinc finger CHY-type profile. 53 129 IPR008913 GO:0008270
Tpr1g3334 305 Pfam Zinc-ribbon 243 301 IPR039512 -
Tpr1g3334 305 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 40 305 - -
Tpr1g3334 305 Pfam Ring finger domain 195 238 IPR001841 -
Tpr1g3334 305 PANTHER CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN 40 305 - -
Tpr1g3334 305 SUPERFAMILY Zinc hairpin stack 132 189 IPR037275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3334 Tpr-Chr1 37675485 37681305 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3334 58 305 C2H2 Transcription Factor Family AT3G18290 39.526 1.26e-53 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3334 K10144 - gmx:100803569 597.045