Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3308 ATGTTCTCCAGCTCTCAATTCGATGCTTCCAATGCCTTCTCCGGTGGCGGATTCATGTCATCGCAACCCAACGATTCTTCTCCGGCACCGACTAAAAACCGCGACTCTCAGGGTTTGGTTCCGGTTACGGTGAAGCAGATAAGTGAAGCTTCTCATTCTGGTGATGAAAAGTCCAATTTCTCCATCAACGGTGTAGATCTGACAAATGTGACTTTGGTTGGAATAGTGCATGAGAAAGCTGAGAGGAACACTGATGTTAATTTTGTTTTGGATGATGGAACTGGACGGATCACATGTAGAAGATGGATCAACGAGACTTTTGACACAAAGGAAATGGAGGAAGTATTGAATGGAAATTATGTTCGCGTTTACGGGCACTTGAAAAGCTTTCAAGGTGTAAGGCAACTTACTGCCTTCTCTGTCAGGCCCGTGACAAATTTTGATGAGATCCCTTTTCACTTTATCGATTGCATACATAACCACCTCTCCACCAAAGTAAAGATGGAAGGAGGAATCCCTTCTACATTTCCTCCATCAAACTCGTCTATGAACACTCCTGTCAAAAGTGCATTGAATGGTTCTCAGGCACCATCATCAAATCCGGGATATGCACAATATAGCACTGATGGACTCAAGGATATTGATAAATTGGTGATCGAGTATCTGCAGCAGCATTCAGACATGTCAGATGAACGGGGAATACATGTTAATGACCTAGCAAAAGAGCTCAGGCTTCCATTGGAGAAGATCATGTTGTCACTAAAGACTCTTGGAGATGATGGTTTGGTATACTCCACCATAGATGATTTCCACTACAAACAAGCTTGA 828 0.4312 MFSSSQFDASNAFSGGGFMSSQPNDSSPAPTKNRDSQGLVPVTVKQISEASHSGDEKSNFSINGVDLTNVTLVGIVHEKAERNTDVNFVLDDGTGRITCRRWINETFDTKEMEEVLNGNYVRVYGHLKSFQGVRQLTAFSVRPVTNFDEIPFHFIDCIHNHLSTKVKMEGGIPSTFPPSNSSMNTPVKSALNGSQAPSSNPGYAQYSTDGLKDIDKLVIEYLQQHSDMSDERGIHVNDLAKELRLPLEKIMLSLKTLGDDGLVYSTIDDFHYKQA* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3308 275 CDD RPA2_DBD_D 69 162 - -
Tpr1g3308 275 PANTHER REPLICATION PROTEIN A-RELATED 1 275 IPR040260 -
Tpr1g3308 275 SUPERFAMILY Nucleic acid-binding proteins 39 162 IPR012340 -
Tpr1g3308 275 Pfam Replication protein A C terminal 183 269 IPR014892 -
Tpr1g3308 275 PIRSF RPA32 1 275 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr1g3308 275 MobiDBLite consensus disorder prediction 13 38 - -
Tpr1g3308 275 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A 1 275 - -
Tpr1g3308 275 Gene3D - 205 275 IPR036388 -
Tpr1g3308 275 Pfam OB-fold nucleic acid binding domain 70 142 IPR004365 GO:0003676
Tpr1g3308 275 Gene3D - 31 165 IPR012340 -
Tpr1g3308 275 SUPERFAMILY "Winged helix" DNA-binding domain 209 273 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3308 Tpr-Chr1 37476806 37481329 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3308 1 273 Core DNA Replication Machinery Family AT2G24490 48.029 3.69e-91 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3308 K10739 - gmx:100802512 437.187