Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tpr1g3305 | ATGTCAGGATTAACTTGCAATTCTTGCAACACTGAATTCAAAGATGATTCCGATCAAAAACTTCATTACAAATCCGAATGGCATCGTTACAATCTCAAACGCAAGGTGGCTGGGGTTCCTGGAGTGACCGAAGCATTGTTTCTAGCTAGACAAGCTGCTCTTGCTCAAGAGAGAGATAAATCTAATGAAAGCCCTATGCTCTATAGCTGTGGCCTATGTGGCAAGGGGTACAAAAGTGAAAAGGCTCATGCTGAGCATCTTAAGTCGAGAACTCATGTGATGCGGGCTTCTGAAGGAGCTAGTGATTCAGATGGGAAGGCTATAATTAAGCCACTTCCACAACGTGTTGTGAATAAGCCTCCTCCTAGAAGACTGGTAGATAACTCTGCTGATGATGATGAAGAAAGTGAAGATGAATGGGTAGAGGTTGATTCTGATGATGATCTGCTTGATGATGCTGAAAAGTCCTTGACAGATTTGAATATGGATGAGAATGCTGATAATGATGATATGGACGAAGATGATGTTGTGGACTTAGATCCATCGTGTTGCTTTATGTGTGATAAAGAGCACAAAACATTAGAAAACTGCATGGTTCACATGCACAAGCACCATGGGTTCTTCATTCCAGATGTCGAGTATTTGAAAGATCCAAAAGGGCTCCTCACCTATCTTGGACTGAAGGTCAAAAGGGACTACTTGTGTCTGTACTGCAACGATCGGTGTCATCCTTTCAGCAGCTTGGAAGCAGTCAGGAAACATATGGCAGCAAAAAATCACTGTAAAGTGCATTATGGCGACGATGATGATGATGAGGAAGTAGAGTTGGAAGAATTCTATGATTATACTAGCAGTTATGTTGATGATCAAGGGAAGCAGCTAGTTGTATCCGGTGATGCTGATAACAATATAGAACTTAGTGATGGGTCTGAGCTTGTAATCACTAAGCTATCTGGTAACAAAAAATCAACCAGAACTCTAGGTTCCCGCGAATACCTGCGTTATTATCGTCAGAAACCACGACCATCGCCAGCAAATAACGTTGCCGTTACTGCAGAATTGGCTGCAAGGTACAGGAGCATGGGTTTGGCCACTGTACAATCAAGGGAGCAACTTGTGAGAATGAAAGTGTTGAAGCAGATGAACAGATCTGGTGTGGAGCAAATGCGTAGCAAGATGGGAATGAAGAGTAATGTAATCCGGAACCTGCCAAACAATGTCACATATTAG | 1230 | 0.426 | MSGLTCNSCNTEFKDDSDQKLHYKSEWHRYNLKRKVAGVPGVTEALFLARQAALAQERDKSNESPMLYSCGLCGKGYKSEKAHAEHLKSRTHVMRASEGASDSDGKAIIKPLPQRVVNKPPPRRLVDNSADDDEESEDEWVEVDSDDDLLDDAEKSLTDLNMDENADNDDMDEDDVVDLDPSCCFMCDKEHKTLENCMVHMHKHHGFFIPDVEYLKDPKGLLTYLGLKVKRDYLCLYCNDRCHPFSSLEAVRKHMAAKNHCKVHYGDDDDDEEVELEEFYDYTSSYVDDQGKQLVVSGDADNNIELSDGSELVITKLSGNKKSTRTLGSREYLRYYRQKPRPSPANNVAVTAELAARYRSMGLATVQSREQLVRMKVLKQMNRSGVEQMRSKMGMKSNVIRNLPNNVTY* | 410 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tpr1g3305 | 409 | PANTHER | ZINC FINGER PROTEIN-RELATED | 1 | 409 | - | - | |
| Tpr1g3305 | 409 | SUPERFAMILY | beta-beta-alpha zinc fingers | 167 | 243 | IPR036236 | - | |
| Tpr1g3305 | 409 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 70 | 92 | IPR013087 | - | |
| Tpr1g3305 | 409 | PANTHER | ZINC FINGER PROTEIN 622 | 1 | 409 | IPR040025 | - | |
| Tpr1g3305 | 409 | SMART | ZnF_U1_5 | 1 | 35 | IPR003604 | GO:0003676|GO:0008270 | |
| Tpr1g3305 | 409 | MobiDBLite | consensus disorder prediction | 84 | 148 | - | - | |
| Tpr1g3305 | 409 | SUPERFAMILY | beta-beta-alpha zinc fingers | 58 | 97 | IPR036236 | - | |
| Tpr1g3305 | 409 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 68 | 97 | IPR013087 | - | |
| Tpr1g3305 | 409 | MobiDBLite | consensus disorder prediction | 84 | 99 | - | - | |
| Tpr1g3305 | 409 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 6 | 28 | IPR013087 | - | |
| Tpr1g3305 | 409 | SUPERFAMILY | beta-beta-alpha zinc fingers | 4 | 36 | IPR036236 | - | |
| Tpr1g3305 | 409 | SMART | c2h2final6 | 182 | 204 | IPR013087 | - | |
| Tpr1g3305 | 409 | SMART | c2h2final6 | 68 | 92 | IPR013087 | - | |
| Tpr1g3305 | 409 | SMART | c2h2final6 | 233 | 260 | IPR013087 | - | |
| Tpr1g3305 | 409 | SMART | c2h2final6 | 4 | 28 | IPR013087 | - | |
| Tpr1g3305 | 409 | MobiDBLite | consensus disorder prediction | 131 | 148 | - | - | |
| Tpr1g3305 | 409 | Pfam | C2H2 type zinc-finger (2 copies) | 184 | 285 | IPR041661 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tpr1g3305 | 1 | 409 | C2H2 Transcription Factor Family | AT4G31420 | 63.942 | 0.0 | 529 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Tpr1g3305 | zf-C2H2_2 | 5.9e-25 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tpr1g3305 | K14816 | - | gmx:100809681 | 604.749 |