Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3297 ATGATGGATGAAAATCCTAAGAAAAAAGGCACCGATGGGATGGTAGCCCCTAAAAAAAGGATGAGCGTTGTGTTTAGAGACACCGCTAATACCAGAAATCGAAATGATCAAATTTGCAGCCGAGTAGGTTGCAGTAGTACTGCCAACCCTCCTAAGGTTGCTCAAGTCAGACCTTCCGAAAAAGGTAAATCTTCAAGGCCATCAATGCAGTCAACTTCAAGTGGCAAGGAGGTAATCGGTAGTTCCCGTAGAACAGCTACAAACCCAGCAAAACCACTTGTAAAGCCTCGGAGAACATTAACTTCAAGTGGACTTCAAGCTGACAAGGAAGGTAAAGAGTCTACTAATGTAACTTTGACGGAAGTAAGAAAATCTAGCGGGGTATCAAATTTAAGTTCTCAAAGGAATTTTAATCAAAGACCTGGAACTGGATTTAGTCAACGAGAAAATGAAAGCATTCGTCCGGCGAAACAAGCTGTTTCTAGCAGCAAGTATGGATTGAGGAACCTCAGATGCAATACTATATCTGATATCATCCCTTCTTCTTGCTCATCATCAGATTCTACCCTTAATAGAAAGAAGGCTATGGTAAAAAAGATAAACACTGGAGGGGAAAGTAGCTCAACTGTGAAAGGGAAGATGACCGGTTCTTCATTGGAAGGATTGAATTCTGGCTCCAGAAATGGAATATTTATATCTGAGGCAAGAGGATCTAAAAATATTCCTCCTCGTAGGGACAATAGCAGAACAACAGTTAGACCTGAAAGATCGATTAGTCGTTATGCCAGGGGAGGATTGTCTAGCCAAGGAAATGAAAACCTCACGGAAACCAATGAGCCCCGTGTTCAGTTACCTAGTTCGCCTAAAAAAAGAAGAAAAATGGGTGCTTTACTGTCACGTTTAACAGTTATAAAAAACAATACCAAGTTTCGATTGGAGATCCGTCAGTGTTCTAAACTAGATAATGAAGGAATATGGAGCAATCCTGTTTATGTTGAACCACGTAGTCACTCATCTGTAAGATCCAGAATGTTTATTATTCATTGGAGTGATACATCAATCCCCAGGTTCATCAAATTTTATTGCGATGGAGATTGCTTTGAGATTTTAACCCCACAAGATTTCATAACCAACAGAAAATTCATTGTCGAAATGAATGATCAGAAGAACATACCATACGTCACCAGAATTAAAGACACTCAACCGATCATCTGTATTGCTTGA 1224 0.3995 MMDENPKKKGTDGMVAPKKRMSVVFRDTANTRNRNDQICSRVGCSSTANPPKVAQVRPSEKGKSSRPSMQSTSSGKEVIGSSRRTATNPAKPLVKPRRTLTSSGLQADKEGKESTNVTLTEVRKSSGVSNLSSQRNFNQRPGTGFSQRENESIRPAKQAVSSSKYGLRNLRCNTISDIIPSSCSSSDSTLNRKKAMVKKINTGGESSSTVKGKMTGSSLEGLNSGSRNGIFISEARGSKNIPPRRDNSRTTVRPERSISRYARGGLSSQGNENLTETNEPRVQLPSSPKKRRKMGALLSRLTVIKNNTKFRLEIRQCSKLDNEGIWSNPVYVEPRSHSSVRSRMFIIHWSDTSIPRFIKFYCDGDCFEILTPQDFITNRKFIVEMNDQKNIPYVTRIKDTQPIICIA* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3297 407 MobiDBLite consensus disorder prediction 236 291 - -
Tpr1g3297 407 MobiDBLite consensus disorder prediction 1 15 - -
Tpr1g3297 407 MobiDBLite consensus disorder prediction 26 53 - -
Tpr1g3297 407 MobiDBLite consensus disorder prediction 99 160 - -
Tpr1g3297 407 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 102 295 IPR045191 GO:0061630
Tpr1g3297 407 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 2 86 IPR045191 GO:0061630
Tpr1g3297 407 MobiDBLite consensus disorder prediction 1 160 - -
Tpr1g3297 407 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 2 86 - -
Tpr1g3297 407 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 102 295 - -
Tpr1g3297 407 MobiDBLite consensus disorder prediction 61 88 - -
Tpr1g3297 407 MobiDBLite consensus disorder prediction 262 284 - -
Tpr1g3297 407 MobiDBLite consensus disorder prediction 239 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3297 Tpr-Chr1 37367515 37369119 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3297 - - mtr:MTR_1g009680 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3297 1 37367515 37369119 Tpr7g0510 7 4316084 4320076 PCT