LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr1g3296	ATGATGGATGAAAATCCTAAGAAAAAAGGCACCGATGGGATGGTAGCCCCTAAAAAAAGGATGAGCGTTGTGTTTAGAGACACCGCTAATACCAGAAATCGAAATGATCAAATTTGCAGCCGAGTAGGTTGCAGTAGTACTGCCAACCCTCCTAAGGTTGCTCAAGTCAGACCTTCCGAAAAAGGTAAATCTTCAAGGCCATCAATGCAGTCAACTTCAAGTGGCAAGGAGGTAATCGGTAGTTCCCGTAGAACAGCTACAAACCCAGCAAAACCACTTGTAAAGCCTCGGAGAACATTAACTTCAAGTGGACTTCAAGCTGACAAGGAAGGTAAAGAGTCTACTAATGTAACTTTGACGGAAGTAAGAAAATCTAGCGGGGTATCAAATTTAAGTTCTCAAAGGAATTTTAATCAAAGACCTGGAACTAGATTTAGTCAACGAGAAAATGAAAGCATTCGTCCGGCGAAACAAGCTGTTTCTAGCAGCAAGTATGGATTGAGGAACCTCAGATGCAATACTATATCTGATATCATCCCTTCTTCTTGCTCATCATCAGATTCTACCCTTAATAGAAAGAAGGCTATGGTAAAAAAGATAAACACTGGAGGGGAAAGTAGCTCAACTGTGAAAGGGAAGATGACCGGTTCTTCATTGGAAGGATTGAATTCTGGCTCCAGAAATGGAATATCTATATCTGAGGCAAGAGGATCTAAAAATATTCCTCCTCGTAGGGACAATAGCAGAACAACAGTTAGACCTGAAAGATCGATTAGTCGTTATGCCAGGGGAGGATTGTCTAGCCAAGGAAATGAAAACCTCACGGAAACCAATGAGCCCCGTGTTCAGTTACCTAGTTCGCCTCATCGTATTGATCTTAATTCTCCTGTCATTGAAGTGTTAAGTGATATTATGCCTATCTCTCCTGAAGAATATGACACCCCTCATTCTCTAATAAATCAGAATGGATTTCGGCGTTACGATATGGACAATATTTCTGAGGTATTATTGGCACTAGAGAGAATTGAGCAAAATGAAGAGTTAACCCATGAGCAAATTCGTTTACTAGAGACCAACTCGATTGTTAGCGGGCTTGACTTATATGATCGTCATAGAGACATGCGATTGGATATTGATGACATGTCATACGAGGAACTCTTAGCTCTTGAAGAGAGAATGGGTACCGTGAGCACAGCTCTAACAGAAGAAGCACTCTCAGATAGTCTTAAAAGAAGTACCTATCAGTCTGCGCCTTCAGATGATGCATCCAACTGTGTTAATGGGGATAAGGGCGATATCAAATGCTGCATTTGCCAGGATGAATATGTTGTTGGAGATGAAGTTGGGAGACTGCAATGTTCACATAAGTATCATGTTGATTGCATACAGGACTGGTTGAGGTTGAAGAACTGGTGCCCTATTTGCAAAGGGTCAGCGGCACTGTCCAATTCATCGCCATCTCATTAA	1467	0.4165	MMDENPKKKGTDGMVAPKKRMSVVFRDTANTRNRNDQICSRVGCSSTANPPKVAQVRPSEKGKSSRPSMQSTSSGKEVIGSSRRTATNPAKPLVKPRRTLTSSGLQADKEGKESTNVTLTEVRKSSGVSNLSSQRNFNQRPGTRFSQRENESIRPAKQAVSSSKYGLRNLRCNTISDIIPSSCSSSDSTLNRKKAMVKKINTGGESSSTVKGKMTGSSLEGLNSGSRNGISISEARGSKNIPPRRDNSRTTVRPERSISRYARGGLSSQGNENLTETNEPRVQLPSSPHRIDLNSPVIEVLSDIMPISPEEYDTPHSLINQNGFRRYDMDNISEVLLALERIEQNEELTHEQIRLLETNSIVSGLDLYDRHRDMRLDIDDMSYEELLALEERMGTVSTALTEEALSDSLKRSTYQSAPSDDASNCVNGDKGDIKCCICQDEYVVGDEVGRLQCSHKYHVDCIQDWLRLKNWCPICKGSAALSNSSPSH*	489

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr1g3296	488	SUPERFAMILY	RING/U-box	431	478	-	-
	Tpr1g3296	488	ProSiteProfiles	Zinc finger RING-type profile.	435	476	IPR001841	-
	Tpr1g3296	488	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RNF165	101	480	IPR045191	GO:0061630
	Tpr1g3296	488	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RNF165	2	85	IPR045191	GO:0061630
	Tpr1g3296	488	Coils	Coil	339	359	-	-
	Tpr1g3296	488	MobiDBLite	consensus disorder prediction	26	53	-	-
	Tpr1g3296	488	MobiDBLite	consensus disorder prediction	1	15	-	-
	Tpr1g3296	488	MobiDBLite	consensus disorder prediction	199	287	-	-
	Tpr1g3296	488	MobiDBLite	consensus disorder prediction	61	88	-	-
	Tpr1g3296	488	MobiDBLite	consensus disorder prediction	239	253	-	-
	Tpr1g3296	488	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED	2	85	-	-
	Tpr1g3296	488	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED	101	480	-	-
	Tpr1g3296	488	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	394	480	IPR013083	-
	Tpr1g3296	488	MobiDBLite	consensus disorder prediction	262	287	-	-
	Tpr1g3296	488	MobiDBLite	consensus disorder prediction	99	160	-	-
	Tpr1g3296	488	MobiDBLite	consensus disorder prediction	1	160	-	-
	Tpr1g3296	488	MobiDBLite	consensus disorder prediction	201	235	-	-
	Tpr1g3296	488	Pfam	Ring finger domain	434	476	IPR001841	-
	Tpr1g3296	488	SMART	ring_2	435	475	IPR001841	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr1g3296	Tpr-Chr1	37366135	37390901	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr1g3296	332	479	C3H Transcription Factor Family	AT2G15530	43.919	1.88e-36	141

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr1g3296	-		-	mtr:MTR_1g009680	644.425