Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3290 ATGGAGGGGATTAAAAAGAAATCAAAGCTTGGATCTACTACGTTGGAGAAAACTCAGGTTTCTCAGATTGATGGAGGATCTAAGAAAACTCAGGTTTCTCAGATTGACGGAGGATCTAAGAAAACTCAGGTTTCTCAGATTGACGGAGGATCTAAGAAATCTCAGGTTGCTCATATTGACGGAGTAACTAAGAAAACTCAAATTGGGGGTAATGATGGAGGAACTAAGGTGGATGATGTAAATAAGAAATCTCAGGTTACTCAGAGGGAGGATGGAACTAAGGAAAATAACCCTGCTGAAGCTGTAGAAAGTCAAGAGGCATGCAAAGTTACAGAAATGGAAGAAGGCTCTAAGGAAACAAATTATATTGAGTATGATTATGATTCTATTAAAGATATCACTAAGAAGAAAGAAATTTGGAGACTAGGAGTGATTTTGGATGACATGTGGATTGTGTCCAAAGGAGAAAATGATGTGACCTTGGAAATGTTGCTAAGGGATTTAAAGGGATACACAATCCAAGCTACTGTGATGACTGACGACATTGTAAAGTGGAAAGATGAGCTAACACCTGGAAATACATATTATATGCGAAACTTTAAAGTCGGAGACAATGATGCACAGTATAAAATGACTCCCCACAAATTTCGCTTAACATTTGTTGGTGCAACAAGAGTTAATGCAGTTGAAATTCCTGGAATTCCAAAAACACATTTTTATTTTAAGGACTTTGAAGAGATATCTAATGGGAAGTTTCAGACTGATATGTTAGTTGATACTATAGGAGTTGTTAACTCTATTGGGAAGACTGTTATTGCAACTACAACAAGGAAAGCTAACATTGCTTTTACCATCAAAGATCTACGTGATAAGGAACTTGATTGTACTTTGTGGGATACTTTAGCTGAACAATTTTTCAATGGTTACAACCAACAATCCAATAATGGTCCTGTTGTCATTATTTTGCGACATGTCCGAATCAGGGAAGCTCAAGGACAATATCCACTGCAACTCACAAATGTGTGGAATGGAACCAAGATTCTATTTGATCCATCAATTCCTGAAATTGAAAATTTCCGTCGCAGTTTGCCCAATGACAACATCTATCCGTCTCAAAACATTACTTTTTCAAATTCTACACAATTCTACACCCAAAGTTATGGTGGATCTCAATACAATTCTGATGAAACCTTCATGAATCATGCCCATGTTCTTTCATTGGGAGCTATGAAAAAACTTAAAAAGGAGACATATTGTGTGACGGTTGTTACCACTTCACACATTAGAGTTTCTAATGGAGGTTGGTTTTTCTATGGTTGTCATGATGGTGAGAACGACTGCTCTTTAAAATGCGAGGGAAGTGAACTCCCCTTTGTATGTCGAAAGTCACACTTCACAACTGATCCTCTAATCAAGTACAAGTTAGATGTTGAAGTATATGATGGTGATGATACAGCCAAGTTTGTTTTTTGGGACAGTACTCTTAACGAATTGGTTGGCCTCAATGCAAAGACTTTACTTGATCACGAAAAGAAGAATGGTTATGGCGACCCACAAGAATACCCTCGCCATTTTGATGCTCTCATGGAACGCAAGTTTGCTATTAGAGTCAAGTGGCAAGTTGGATGGGGAGGAATGGGATCTGTTCTCATGTGTAAGGATAGTCCTGAATTGATTGCCAAAATTCAGGAGCAGCTACCAATTGCTGAGAGTGCATGCAAGGACATTCGGTCTATTGATTCTATTGAGGAAGAACATTGTGGAATTTCTGAATCACCTACAATTCAGGTGTTTACCCAAGATGATATTGATCAATTTTCACGGCTAGATGATGGAATTATGTCAACTCCAAATGTTTCTGGATCAGCGGAGAACGATATCTCTCCTTCATCACAAAAAACTCCTGCCAAAAGGACTGCATCAAAGGAACAACCAGCTGATTCTCTTAATGTTGATTCTCAGGCTTCATCAACCAGATCTGGCAAACTGATTAAAAAGGAGAAAATATAA 2010 0.3811 MEGIKKKSKLGSTTLEKTQVSQIDGGSKKTQVSQIDGGSKKTQVSQIDGGSKKSQVAHIDGVTKKTQIGGNDGGTKVDDVNKKSQVTQREDGTKENNPAEAVESQEACKVTEMEEGSKETNYIEYDYDSIKDITKKKEIWRLGVILDDMWIVSKGENDVTLEMLLRDLKGYTIQATVMTDDIVKWKDELTPGNTYYMRNFKVGDNDAQYKMTPHKFRLTFVGATRVNAVEIPGIPKTHFYFKDFEEISNGKFQTDMLVDTIGVVNSIGKTVIATTTRKANIAFTIKDLRDKELDCTLWDTLAEQFFNGYNQQSNNGPVVIILRHVRIREAQGQYPLQLTNVWNGTKILFDPSIPEIENFRRSLPNDNIYPSQNITFSNSTQFYTQSYGGSQYNSDETFMNHAHVLSLGAMKKLKKETYCVTVVTTSHIRVSNGGWFFYGCHDGENDCSLKCEGSELPFVCRKSHFTTDPLIKYKLDVEVYDGDDTAKFVFWDSTLNELVGLNAKTLLDHEKKNGYGDPQEYPRHFDALMERKFAIRVKWQVGWGGMGSVLMCKDSPELIAKIQEQLPIAESACKDIRSIDSIEEEHCGISESPTIQVFTQDDIDQFSRLDDGIMSTPNVSGSAENDISPSSQKTPAKRTASKEQPADSLNVDSQASSTRSGKLIKKEKI* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3290 669 MobiDBLite consensus disorder prediction 13 52 - -
Tpr1g3290 669 MobiDBLite consensus disorder prediction 1 104 - -
Tpr1g3290 669 Pfam Domain of unknown function DUF223 162 257 IPR003871 -
Tpr1g3290 669 MobiDBLite consensus disorder prediction 76 97 - -
Tpr1g3290 669 Gene3D - 128 230 IPR012340 -
Tpr1g3290 669 CDD RPA1_DBD_B_like 259 364 - -
Tpr1g3290 669 MobiDBLite consensus disorder prediction 618 660 - -
Tpr1g3290 669 Gene3D - 233 369 IPR012340 -
Tpr1g3290 669 MobiDBLite consensus disorder prediction 618 669 - -
Tpr1g3290 669 CDD RPA1_DBD_A_like 141 226 - -
Tpr1g3290 669 PANTHER REPLICATION FACTOR A 1, RFA1 130 550 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr1g3290 669 SUPERFAMILY Nucleic acid-binding proteins 125 227 IPR012340 -
Tpr1g3290 669 SUPERFAMILY Nucleic acid-binding proteins 414 541 IPR012340 -
Tpr1g3290 669 Gene3D - 383 543 IPR012340 -
Tpr1g3290 669 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-LIKE 130 550 - -
Tpr1g3290 669 SUPERFAMILY Nucleic acid-binding proteins 239 369 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3290 Tpr-Chr1 37307581 37312184 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3290 165 506 Core DNA Replication Machinery Family AT5G45400 20.917 1.58e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3290 - - lang:109343677 278.87