Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3287 ATGGATTCGTCAAATAACAGTGAATTTGAAATTGATGAAATGGAAGCAGAATATGGGAAGTTTCTGGATCAATATGCAAAAAATTATGACTCTTACGATGCTCAAGGATCAAATCAGACTAATCATGACATATCCCCTGTTGATAACAATATAGAACCATGTCTTGAAAATTTCTACGGTCAAACATTTGGTAGATTGTCAATTAGTGGTCAACTAATACAATCATATGTTTTTGAATTAACACTTGCTCAACTAAACAAGGCAACAAAGACACAATTTACACTACCTTCTGAATTTAGCAATTATGTAAGGCAATACAATTTTCATAAGCTGGTTCTACAAGTACCAAACAAGAGCAGTTCAATTGTTCACTTAAAATATCCAGAAAATCATTCGGAGAATGTCAAAATTGCAAGAGGATGGAAAAATTTCTGTTTGGCCAACAATATTGAATTAGGAGATAGAATAAGTTTTGAATTCAAAGATATAAACTTAAATGTTTGTCAGGTTTCCATAGTTTAG 522 0.3161 MDSSNNSEFEIDEMEAEYGKFLDQYAKNYDSYDAQGSNQTNHDISPVDNNIEPCLENFYGQTFGRLSISGQLIQSYVFELTLAQLNKATKTQFTLPSEFSNYVRQYNFHKLVLQVPNKSSSIVHLKYPENHSENVKIARGWKNFCLANNIELGDRISFEFKDINLNVCQVSIV* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3287 173 CDD B3_DNA 78 164 IPR003340 GO:0003677
Tpr1g3287 173 Pfam B3 DNA binding domain 78 161 IPR003340 GO:0003677
Tpr1g3287 173 Gene3D - 74 173 IPR015300 -
Tpr1g3287 173 ProSiteProfiles B3 DNA-binding domain profile. 78 173 IPR003340 GO:0003677
Tpr1g3287 173 SUPERFAMILY DNA-binding pseudobarrel domain 76 168 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3287 Tpr-Chr1 37283796 37285095 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr1g3287 B3 2.6e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3287 - K17570 pvu:PHAVU_010G047200g 44.2838