Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3286 ATGAACAGTAACAAAAGGAGCAGCAAAATGGATTTTAAGGAAATTCTGGATATTTTTGAAGTTGCACATGTAAGTCAGATCGGTGGAGAAGGTTCAGAGGCTTTGGGTAGTAGTTCTTTTTCGGAGAATGCTGAATATTCCTCAGACCAAGATGTGGAAGACACTGACAATCCGTGCTACGGAAACAACTTTGATGCTGAAACAGCTGTAGATTGTACGGATGACTTAGAGAAAATAAATATGAAGGAAACCAGTTCGGATCAACTTATGAGGTACCATTTTCCTGATCGTAGAGTTGCATTTATGTTTTACAATTGCTATGGTCGTTTCCATGGATTTGCCGGTAGAAAAAGTCGAGTTGTTAAGAATACTAATGGCGAAGTTGTTCAACAAACCTTTGTTTGCCATAGAGAAGGTATTAGGAATGCAAATAATGCTTTGTCTCGTAAGCGAGAGCAAAAACCTACTAGTAGGTGTCGTTGTCCAGCAAAACTTCAAGTGCATTTGGACTTGGGTAGTGAACGTTGGTACATAAAGTTGTTTGATGATATTCATAATCATTCGTTCTTGGATGAGAAGTACGAGGGTATGCTACCAGCACACAGGAAGATGAGCGATTACGACAAATACCAAATGAAAACAATGAGGAAAGCTGGCATTCCAACATCAGGTATTTATGGGTTTTTTGCTCGCTAG 696 0.3937 MNSNKRSSKMDFKEILDIFEVAHVSQIGGEGSEALGSSSFSENAEYSSDQDVEDTDNPCYGNNFDAETAVDCTDDLEKINMKETSSDQLMRYHFPDRRVAFMFYNCYGRFHGFAGRKSRVVKNTNGEVVQQTFVCHREGIRNANNALSRKREQKPTSRCRCPAKLQVHLDLGSERWYIKLFDDIHNHSFLDEKYEGMLPAHRKMSDYDKYQMKTMRKAGIPTSGIYGFFAR* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3286 231 Pfam FAR1 DNA-binding domain 103 189 IPR004330 -
Tpr1g3286 231 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 45 211 - -
Tpr1g3286 231 MobiDBLite consensus disorder prediction 32 46 - -
Tpr1g3286 231 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 45 211 - -
Tpr1g3286 231 MobiDBLite consensus disorder prediction 32 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3286 Tpr-Chr1 37268503 37269480 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tpr1g3286 FAR1 3.4e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3286 - - mtr:MTR_6g022080 281.952