Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3270 ATGGATCAAAAGAAATCTAACAAAATCAGAGAAATTGTTAGACTTCAACAGATCCTTAAGAAATGGAGAAGAATAGCAAATTCATCAAAGACAACAACCTCAACAACTACAAACAACATAACAAACAGCAAAAGCATGAAGTTTCTGAAAAGAACACTTTCTTTATCAGAACGTGAAGGAACAATAACATCATCAAACAATGGTTCTGTTCCAAAAGGTTATTTAGCTGTTTGTGTTGGAGAAGAACTTAAAAGATTTATTATACCAACTGAATATTTGGGCCATCAAGCTTTTCAGATTCTTTTGAGAGAAGCTGAAGAAGAATTTGGATTTCAACAAACTGGTGTATTGAGAATTCCTTGTGAAGTTTCTGTTTTTGAGAGTATTTTGAAAATGGTTGAAGATGGAAAGAAAAATGATAAGTTTTCTTCTAATCAAGAATGTAGATCACTTAACATTGAAGAAATGATGGGTTTTTGTTCTTTAGAAAATCAACTTGCTTGTTCTCATCATCCTCAAAGTCCATTGTGCAGATAA 537 0.3184 MDQKKSNKIREIVRLQQILKKWRRIANSSKTTTSTTTNNITNSKSMKFLKRTLSLSEREGTITSSNNGSVPKGYLAVCVGEELKRFIIPTEYLGHQAFQILLREAEEEFGFQQTGVLRIPCEVSVFESILKMVEDGKKNDKFSSNQECRSLNIEEMMGFCSLENQLACSHHPQSPLCR* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3270 178 Pfam Auxin responsive protein 21 133 IPR003676 GO:0009733
Tpr1g3270 178 PANTHER SAUR FAMILY PROTEIN 6 178 - -
Tpr1g3270 178 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 6 178 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3270 Tpr-Chr1 37168916 37169689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3270 1 178 Calmodulin-binding Proteins AT4G31320 49.749 1.05e-60 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3270 K14488 - gmx:100799598 242.662