Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3263 ATGCAAAAGGACAAAGAAGTTGTTAGCAAGGAAGGGAAAGAAATGGAAACGGAAGAAGGAACTCGTGCGAAAGAAGAAACCCTACCTCCTGGATTTCGATTTCATCCAACCGATGAAGAACTCATTACTTACTATCTTGTAAACAAGATTTCAGATGCTGATCATTTTACTTGCAAAGCAATAGGTGATGTAGATCTCAACAAGTGCGAGCCATGGGAGCTTCCTGGGAAGGCAAAGATGGGTACAAAAGAATGGTACTTCTTCAGTCTAAGAGATCGTAAATATCCAACAGGTGTGAGAACTAATAGAGCAACAAACACTGGATATTGGAAAACCACAGGGAAAGACAAGGAGATATTCAATAGTGTTACTTCTGAGTTGGTTGGTATGAAGAAGACTTTAGTTTTTTACAAAGGTAGGGCTCCTAGAGGAGAAAAATCCAACTGGGTCATGCATGAATACCGTATTCATTCAAAATCAACCTTCAGAACCAACAAGCAAGATGAATGGGTGGTTAGCAGGGTATTCCGCAAAAGTGCAGGTGCAAAGAAGTACCCTTCATCAAACCCTAATAGATCAGTCATGATGAATCCTTACAATATCAATCTAGAAGTTGCTCATCCTAACTTCAACAACAATCACAATATGCCACCACCACAAATGATGCAGCTAGGACTAGATCCTGCAACTCATTTCCAGCTCTATGGAAGAAACTACATCAACACTGCAGAAGTTCTACGAGCCGGTATACCGATGCAGCAATATTCCAATTTGAATTTTCCAGTATCATCATCATCAACATCACCTTTAGGAGTTGGAGATGTTGGAGGATTCACTATTTCAGGGCTTAATTTGAATCTTGGTGGATCAACTTCATCACAAACCATTTTAAGGCCAATGCCATCAACTGTTCATAATGCTATGCATGATTTTAGCTCCAATATGATGATGGCGGGTGCAAATAGTAATATTCAGATTGCTGCAGAGAATAATAATAATAATAATCATAATGTAGGGTATGGTGGAGGAGATCAGGTGAATAATGCAAACCCTAATAGGTACAATATGCAAGGTACTATGGATCATTGTGTGGATCTTGATCATTACTGGCCACCTTCCTACTGA 1125 0.3956 MQKDKEVVSKEGKEMETEEGTRAKEETLPPGFRFHPTDEELITYYLVNKISDADHFTCKAIGDVDLNKCEPWELPGKAKMGTKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSTFRTNKQDEWVVSRVFRKSAGAKKYPSSNPNRSVMMNPYNINLEVAHPNFNNNHNMPPPQMMQLGLDPATHFQLYGRNYINTAEVLRAGIPMQQYSNLNFPVSSSSTSPLGVGDVGGFTISGLNLNLGGSTSSQTILRPMPSTVHNAMHDFSSNMMMAGANSNIQIAAENNNNNNHNVGYGGGDQVNNANPNRYNMQGTMDHCVDLDHYWPPSY* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3263 374 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 370 - -
Tpr1g3263 374 Gene3D NAC domain 37 182 IPR036093 GO:0003677|GO:0006355
Tpr1g3263 374 SUPERFAMILY NAC domain 23 178 IPR036093 GO:0003677|GO:0006355
Tpr1g3263 374 ProSiteProfiles NAC domain profile. 28 178 IPR003441 GO:0003677|GO:0006355
Tpr1g3263 374 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 13 370 - -
Tpr1g3263 374 Pfam No apical meristem (NAM) protein 29 156 IPR003441 GO:0003677|GO:0006355
Tpr1g3263 374 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3263 Tpr-Chr1 37053497 37056393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3263 22 371 NAC Transcription Factor Family AT2G24430 50.708 1.06e-104 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tpr1g3263 NAM 7.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3263 - - lja:Lj1g3v2035130.1 440.269