Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3238 ATGATAATTAAGAAGAATCTCAAATCGGAAATGCCGAGTCGGAAACGGACTAGACTCGGTAACTCGGAGGAAGAAGAAGACGAGTCAAAGTTGACTCAGATGAAGAACAAGAAGAAGAAAATTAATGGTAATTATCCGTTAAATCTTCTCGCCGGTGCAATTCCGGCTAGTATTAAGGGATTACTCGGTGCAATTCCGGCAACCACCGTGGCATCATCGGAAAATTGCTTTTCTGTATCTAACGGAAAAGCTGATATTAAGAACACGGCAAACGGAACACGGCCTCCGCTTGTTCGAACGTCGCGGGGCCGGCTTCAAGTGTTGCCGTCGCGGTTTAATGATTCTATTATTGTAAATTGGAAGAAGGATGGAAGGAATTATGCTGGTGTTGGTGTTGGTGCTGGTGCCGGTGCCGGCGTCACTGCCGGTGCTGCCACGAGCTTTCGTGAATTTGAATTTGATGAATTAAGTTTGAAGAATTGTGGTGGAAAAGGGAAGAATGGTGCAAGTGCAACTTCCGGCCGCCACGGGTATTCGGTTTTGTGTGAAGAGGTTTTGCATAAGAATTTTGGTGTTGCTGCTGCTAACAATAAAGAATTGAGTTTGCGTGAGATTTTTGAGGAAACAAAGTTGAATAATGAAGTTTTGAAGAAGGAAGAGAAGAAGAAGAAGAAAGAAGGGTTTTTTGGGCCAGAAGATTTTTATGCTGGTGATTTAGTGTGGGCTAAAGCTATGAAAAAGGAACCTTTTTGGCCTGCAATTGTTCTTGAGCCAATGTCTCAAGCACCTGAGCTGGTTTTGAGATCATGTATAGCTGATGCTACTTGTGTCATGTTTCTTGGATACTCTAAGAATGAAAATCACAGGGATTTTGCATGGGTGAAATGTGGAATGATTTTTCCATTTATGGATAATGTAGACAGGTTTCAAGAGCAGTCTGAATTGAGCTACTGTGATTCGTCGCAATTTCTAGCGGCAGTTGAGGAGGCATTTTTGGCTGATCAGGGGATTGTAGAGAATATTATAGAAGATATAAATGCGGTGGCTGGTAGTAATGGTCGCAGTAATAGTTCTATTCTTAAAGAATTTCAGAATGTCAGTGTTTCAAGACGGAATGTGGATGGTCTTGTTCAAAAGAAGGATATATTTAACGGAAAGAAAAACATGCGACTTTGTGATGAATGTGGATTGGACCTTCCTTTCAATACGTCAAAGAAAACAAGGGATTTGACTCCCGGTGGTCAACTCCTATGTAAAACATGTGCTAAGTTAACAAAGTCAAAACATTATTGCGGCATATGTAATAAAGTTTGGAATCGATCAGATAGCGGAAGCTGGGTACGTTGTGATGGATGTAAAGTATGGGTGCATGCCGAATGCGACAAAATCTCCAGCATCCTTTTTAAGAATCTTGGAAGCACTGATTACTTCTGTCCTGCTTGCAAAGTGAAGTTTAATTTTGAATTATCTGATTCAGAAAAATCACATCCAAAAGTCAAATGGAACAAAAACAATGGGCAGCTAGAACTTCCAAAGAAGGTCACTGTTCTCTGCAATGGTGTAGAAGGCATATATTTTCCAAGCCTTCACTTAGTAATGTGCAAGTGTGGTTTTTGTGAGACTGAAAAACAAGCACTTAGTGAATGGGAACGCCACACAGGTTCCAAATTTAGAAACTGGAAAGCAAGTATTCAGGTTAAAGGATCCATGGTATCACTGGAACAATGGATGCTGCAGTTGGCTGAATTTCATGCTAAAGCTATAGTTTCTGTCAAACCTAAAAGACCGTCTTCAAAAGCAAGAAAGCAGAAATTGCTTACCTTTCTGCAAGACAAGTATGAACCTGTTTGTGCTAAGTGGACTACAGAACGATGTGCTATATGTAGATGGGTTGAAGATTGGGACTACAACAAAATTATAATCTGCGTCAGATGTCAAATAGCCGTTCATCAAGAATGCTATGGAGCAAGACATGTTCGAGACTTTACATCGTGGGTTTGTAAAGCTTGTGAAACACCAGACATCACGCGAGAGTGTTGCCTTTGTCCTGTAAAAGGTGGTGCTCTAAAGCCTACTGATATTGATCCATTATGGGTTCATGTCACTTGTGCCTGGTTTCGACCTGAAGTATCTTTTGCTAGTGATGAGAAAATGGAGCCTGCTTTGGGTATCTTGAGTATTCCATCAAATTCTTTTGTGAAGATATGTGTTATTTGTAAGCAAATTCATGGTTCGTGCACACAATGTGTCAAGTGTTCCACATTTTTCCATGTCATGTGTGCTTCAAGGGCCGGTTATCGCATGGAGTTGCATTGTTCAGAGAAAAATGGTAAACAGACAACAAGAATGGTTTGTTATTGTGCTTATCACAGGGCTCCCAATCCAGACACTGTTTTGATTATACAAACCCCTCATGGGGTCATTTCAACTAAAATACTTATCCAAAATAAGAGAAAAGTTGGGTCAAGATTAATTTCATCGAACAGAATAAAGGTAGAAGAAACTCCTCCAGCAGATAACACCGAACATGATCCATTTTCTGCTGCTAGGTGCCGAGTCTTTGTAAGAACAAACCACACAAAAAAGAGAGCAGCTGATGAAGCCATTCCTCATAAAGTGAGGGGTCACTGCCATCATTCTTTAGATGCAATACAGAGATTAAATGCAAGCAAAGTGGTAGATGAGTCTCAGACATTTTCATCTTTTAGGGAGCGCCTTCATCACTTACAGAGAACCGAAAATGAACGAGTGTGCTTTGGTAGATCTGGCATACATGGATGGGGTCTATTTGCACGAAAAAGTATTCAAGAAGGAGAAATGGTCCTTGAATATCGTGGTGAACAAGTAAGGCGCAGTGTTGCAGATCTAAGGGAGGCACGTTATAAATTAGAAAGGAAAGACTGCTATCTGTTCAAAATAAGTGAAGAAGTGGTAGTTGATGCAACTGATAAAGGAAATATTGCGCGGCTAATTAACCATTCTTGTATGCCAAATTGCTATGCAAGGATCATGAGTGTAGGTCATGACGAGAGCCGGATCGCACTCATTGCCAAGACTAATGTATCTGCTGGTGATGAACTAACGTATGACTACTTGTTTGATCCTGATGAGCCAGATGAGTTTAAAGTCCCTTGTTTATGTAAATCTCCAAACTGCAGAAAATTCATGAATTAG 3174 0.4064 MIIKKNLKSEMPSRKRTRLGNSEEEEDESKLTQMKNKKKKINGNYPLNLLAGAIPASIKGLLGAIPATTVASSENCFSVSNGKADIKNTANGTRPPLVRTSRGRLQVLPSRFNDSIIVNWKKDGRNYAGVGVGAGAGAGVTAGAATSFREFEFDELSLKNCGGKGKNGASATSGRHGYSVLCEEVLHKNFGVAAANNKELSLREIFEETKLNNEVLKKEEKKKKKEGFFGPEDFYAGDLVWAKAMKKEPFWPAIVLEPMSQAPELVLRSCIADATCVMFLGYSKNENHRDFAWVKCGMIFPFMDNVDRFQEQSELSYCDSSQFLAAVEEAFLADQGIVENIIEDINAVAGSNGRSNSSILKEFQNVSVSRRNVDGLVQKKDIFNGKKNMRLCDECGLDLPFNTSKKTRDLTPGGQLLCKTCAKLTKSKHYCGICNKVWNRSDSGSWVRCDGCKVWVHAECDKISSILFKNLGSTDYFCPACKVKFNFELSDSEKSHPKVKWNKNNGQLELPKKVTVLCNGVEGIYFPSLHLVMCKCGFCETEKQALSEWERHTGSKFRNWKASIQVKGSMVSLEQWMLQLAEFHAKAIVSVKPKRPSSKARKQKLLTFLQDKYEPVCAKWTTERCAICRWVEDWDYNKIIICVRCQIAVHQECYGARHVRDFTSWVCKACETPDITRECCLCPVKGGALKPTDIDPLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCVKCSTFFHVMCASRAGYRMELHCSEKNGKQTTRMVCYCAYHRAPNPDTVLIIQTPHGVISTKILIQNKRKVGSRLISSNRIKVEETPPADNTEHDPFSAARCRVFVRTNHTKKRAADEAIPHKVRGHCHHSLDAIQRLNASKVVDESQTFSSFRERLHHLQRTENERVCFGRSGIHGWGLFARKSIQEGEMVLEYRGEQVRRSVADLREARYKLERKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGHDESRIALIAKTNVSAGDELTYDYLFDPDEPDEFKVPCLCKSPNCRKFMN* 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3238 1057 CDD SET_SETD1-like 902 1053 - -
Tpr1g3238 1057 CDD ePHD_ATX3_4_5_like 679 790 IPR041955 -
Tpr1g3238 1057 ProSiteProfiles SET domain profile. 915 1032 IPR001214 GO:0005515
Tpr1g3238 1057 Pfam PHD-zinc-finger like domain 678 790 - -
Tpr1g3238 1057 ProSitePatterns Zinc finger PHD-type signature. 625 670 IPR019786 -
Tpr1g3238 1057 MobiDBLite consensus disorder prediction 1 37 - -
Tpr1g3238 1057 SUPERFAMILY FYVE/PHD zinc finger 623 687 IPR011011 -
Tpr1g3238 1057 Pfam PWWP domain 237 330 IPR000313 -
Tpr1g3238 1057 SMART PostSET_3 1041 1057 IPR003616 -
Tpr1g3238 1057 ProSiteProfiles PWWP domain profile. 236 305 IPR000313 -
Tpr1g3238 1057 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1 1057 - -
Tpr1g3238 1057 Pfam PHD-finger 430 483 IPR019787 -
Tpr1g3238 1057 ProSiteProfiles Zinc finger PHD-type profile. 428 484 IPR019787 -
Tpr1g3238 1057 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 617 673 IPR013083 -
Tpr1g3238 1057 CDD PHD_TCF19_like 431 481 - -
Tpr1g3238 1057 MobiDBLite consensus disorder prediction 1 35 - -
Tpr1g3238 1057 Coils Coil 206 226 - -
Tpr1g3238 1057 SUPERFAMILY FYVE/PHD zinc finger 427 486 IPR011011 -
Tpr1g3238 1057 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 1057 IPR025780 -
Tpr1g3238 1057 CDD PHD_ATX3_4_5_like 624 670 IPR042011 -
Tpr1g3238 1057 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 424 485 IPR013083 -
Tpr1g3238 1057 ProSiteProfiles Post-SET domain profile. 1041 1057 IPR003616 -
Tpr1g3238 1057 ProSiteProfiles Extended PHD (ePHD) domain profile. 676 791 IPR034732 -
Tpr1g3238 1057 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 674 792 IPR013083 -
Tpr1g3238 1057 Pfam PHD-finger 637 671 - -
Tpr1g3238 1057 Gene3D - 231 336 - -
Tpr1g3238 1057 SUPERFAMILY Tudor/PWWP/MBT 228 333 - -
Tpr1g3238 1057 SMART PHD_3 430 482 IPR001965 -
Tpr1g3238 1057 SMART PHD_3 735 791 IPR001965 -
Tpr1g3238 1057 SMART PHD_3 624 671 IPR001965 -
Tpr1g3238 1057 SMART set_7 915 1038 IPR001214 GO:0005515
Tpr1g3238 1057 PANTHER PHD FINGER PROTEINS 1 1057 - -
Tpr1g3238 1057 Pfam SET domain 926 1031 IPR001214 GO:0005515
Tpr1g3238 1057 Gene3D SET domain 815 1057 IPR046341 -
Tpr1g3238 1057 SUPERFAMILY SET domain 908 1054 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3238 Tpr-Chr1 36835362 36845438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3238 625 790 C2H2 Transcription Factor Family AT3G14740 34.286 1.38e-19 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tpr1g3238 zf-HC5HC2H_2 4.4e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3238 - - gmx:100775276 1530