Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3237 ATGTTTGCAGAAACTGGTCTTCTCTTCCCTTATTTACAGAATTACTCTCAAGACTTTCAACAACTTGATGAACAGAATTACTCTCAAGAATTTCAACAACTTGAAGAATATTGCATGACTCACAAATCCAATGCTTCAATGAGTGACTTAGCTCAATCATCTGCAATGTCGGAATTTGATTTATTTGTAGAGGGAGATCTGTTCAAAGCGCCTGAGACGATTATGGAAGAACCGGCGATGGACCTTGATCCAATGCAAGCTGCCATGTCAATGATATCTTGTGGAGAAAATGTGTCGTCACAAGGTTTAAAATCTTCGGAGATTGACGATGTGTTTCAAAATGAACAGCTTTTGAGTGAGGTATACTATGAATGCAAAAAGGATATGTTAGAAAAGGCGGCTATTGAGTCACCTCTTTCTGAAATTCTTGAAATCAAGATTCCTGCTCTGAACATCGACGAGAATTCGATTCAAGAAAACAAACCAATTCCTGATGTACTATTACCGAAGAGTGTCAGTTCCGGAAGTTTGAATTCAATGGATTGGATGAATGGAGCTGCAATGAAGCCTGCTTTCCTTGATTTCCCTCGAATTGATTTCAGCGCAGTTTATGGAATGCGGAGAGCATTTAGTGAAGGAGATATAAAGACTCTTGGCAATGGCAACATGAGTGTTGGTCTATCTACTCTTGAGAGGCCTTTTCTTCTCAGCAACTGCACGAGCGAGCAACGTCAAGAAAAACTCTCTAGATACAGGAATAAGAAGACAAGGAGAAACTTTGGGAGGAAAATCAAGTATGCTTGCAGGAAGGCGCTCGCTGACAGCCAACCAAGAATCCGTGGAAGATTTGCGAAAACGGAGGAATATGATGTCAAGAGACAATAA 885 0.4045 MFAETGLLFPYLQNYSQDFQQLDEQNYSQEFQQLEEYCMTHKSNASMSDLAQSSAMSEFDLFVEGDLFKAPETIMEEPAMDLDPMQAAMSMISCGENVSSQGLKSSEIDDVFQNEQLLSEVYYECKKDMLEKAAIESPLSEILEIKIPALNIDENSIQENKPIPDVLLPKSVSSGSLNSMDWMNGAAMKPAFLDFPRIDFSAVYGMRRAFSEGDIKTLGNGNMSVGLSTLERPFLLSNCTSEQRQEKLSRYRNKKTRRNFGRKIKYACRKALADSQPRIRGRFAKTEEYDVKRQ* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3237 294 PANTHER CCT MOTIF FAMILY PROTEIN 37 292 - -
Tpr1g3237 294 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 37 292 - -
Tpr1g3237 294 Pfam CCT motif 244 286 IPR010402 GO:0005515
Tpr1g3237 294 ProSiteProfiles CCT domain profile. 244 286 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3237 Tpr-Chr1 36827477 36831569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3237 219 288 C2C2-CO-like Transcription Factor Family AT5G57660 44.444 2.12e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tpr1g3237 CCT 1.9e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3237 - - gmx:100814332 426.787