Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3233 ATGGACTTCGATAGACTTGGACCGTTGGATCCAGGTGGTTCATCTCGTCGCTCCACCGCACCTCTAACAAACTCCACCACATCCAATTCATCTCAAAAAAACAATAAGAAACTCATCATGATTTCAATCCTCGCCGTCACTTTAATCATCGCCTCCGCCATCTCCGCCACACTAATCACTGTAATCCGCTCCCGTGCTTCATCCAATGATCAAAACTCCGCGAACCACCGCGCCAAACCAACTCAAGCAATCTCCCGAACCTGTAGCAAGACAAGATACCCCTCACTATGCATAAACTCCCTCCTAGATTTCCCCGGCTCCACCGCCGCCTCCGAGCAACAACTAGTTCATATCTCATTCAACATGACACATCGCCACATCAGCAAAGCACTCTTCGCATCCTCAGGGCTCTCGTATGCAGTGTCAAACTCACGAGTTCGCGCTGCATACGAGGATTGCCTGGAACTAATGGACGAATCCATGGACTCAATCAGAATGTCCATGGATTCATTAACCACCATGTCATCGACTCTTTCCCGCGACGATGAACCATCAAATGCCGCGGGATCAGAGGATGTGATGACGTGGCTCAGTGCCGCGTTAACTAACCAAGACACATGTATGGAAGGATTTGAAGACATTAGCGGCACCGTTAAGGATCAGATGGTGAATAATTTGAAGGATTTATCGGAACTAGTGAGTAATTCTCTCGCGATATTTTCAGGGAGTGGAGATTTTGATCTTACTGGAGTGCCGATACAGAATAAGAGACGGTTATTGGGAATTGAGAAACAAGATAATGATGATGTTGTCGGAGATATCTCGCGAGAATTTCCGAAATGGCTTAGGAAACGAGATAGGAGATTGTTGAGTTTACCGGTATCGGAGATTCAAGCTGATGTTATCGTTTCGAAAAGCGGTAACGGAACGGTGAAGACAATTACTGAAGCGATTAAAAGAGCACCGGATCATAGTAGCCGTCGGTTCATAATCTATGTGAGGGCAGGAAGGTATGAAGAGAATAATTTAAAGGTGGGAAAAAAGAAAACCAATATTATGTTTATAGGAGATGGGAGGGGTAAAACTGTCATTACAGGAAAAAGAAGTGTTGGAGATGGCATGACTACTTTCCACACCGCTTCCTTTGCTGCTAGTGGTCCTGGCTTCATGGCACGTGACATTACATTTGAGAACTATGCTGGACCGGAGAAGCACCAAGCGGTGGCGCTCCGTGTTGGAGCAGATCACGCGGTGGTGTACCGCTGCAACATTATTGGGTACCAAGACTCATGCTATGTCCACTCCAACCGTCAATTCTTCCGCGAATGCAACATTTATGGCACCGTAGATTTTATATTTGGAAATGCTGCGGTTGTTTTTCAAAAGTGCAACATTTATGCTCGCAAGCCCATGGCCCAACAAAAGAACACCATCACGGCTCAAAATAGAAAAGATCCAAATCAAAATACGGGTATTTCCATTCATGATTGTCGGATCCTACCTGCCCCAGATCTAGCCTCATCAAAGGGCATTGAAACATATTTAGGTCGTCCGTGGAAAATGTATTCTAGGACCATTTACATGTTGTCCTATATGGGTGGTCACGTGCAACCACGCGGATGGTTGGAATGGAATGGAGACTTTGCTTTAAATACATTGTATTATGGTGAGTACATGAATTTTGGCCCGGGTGCAGCTATCGGACAAAGGGTCAAATGGCCTGGATACCGAGTCATTACTTCTACTGTGGAGGCCAATAGATACACCGTGTCCCAATTCATCTCCGGTTCGTCGTGGTTACCATCTACAGGAGTGGCATTTTTGGCCGGGTTATCCACTTGA 1842 0.4598 MDFDRLGPLDPGGSSRRSTAPLTNSTTSNSSQKNNKKLIMISILAVTLIIASAISATLITVIRSRASSNDQNSANHRAKPTQAISRTCSKTRYPSLCINSLLDFPGSTAASEQQLVHISFNMTHRHISKALFASSGLSYAVSNSRVRAAYEDCLELMDESMDSIRMSMDSLTTMSSTLSRDDEPSNAAGSEDVMTWLSAALTNQDTCMEGFEDISGTVKDQMVNNLKDLSELVSNSLAIFSGSGDFDLTGVPIQNKRRLLGIEKQDNDDVVGDISREFPKWLRKRDRRLLSLPVSEIQADVIVSKSGNGTVKTITEAIKRAPDHSSRRFIIYVRAGRYEENNLKVGKKKTNIMFIGDGRGKTVITGKRSVGDGMTTFHTASFAASGPGFMARDITFENYAGPEKHQAVALRVGADHAVVYRCNIIGYQDSCYVHSNRQFFRECNIYGTVDFIFGNAAVVFQKCNIYARKPMAQQKNTITAQNRKDPNQNTGISIHDCRILPAPDLASSKGIETYLGRPWKMYSRTIYMLSYMGGHVQPRGWLEWNGDFALNTLYYGEYMNFGPGAAIGQRVKWPGYRVITSTVEANRYTVSQFISGSSWLPSTGVAFLAGLST* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3233 613 CDD PMEI-like_3 88 241 - -
Tpr1g3233 613 TIGRFAM PME_inhib: pectinesterase inhibitor domain 59 240 IPR006501 GO:0004857
Tpr1g3233 613 Gene3D Invertase/pectin methylesterase inhibitor family protein 81 242 IPR035513 -
Tpr1g3233 613 Pfam Plant invertase/pectin methylesterase inhibitor 83 239 IPR006501 GO:0004857
Tpr1g3233 613 Pfam Pectinesterase 300 596 IPR000070 GO:0030599|GO:0042545
Tpr1g3233 613 ProSitePatterns Pectinesterase signature 2. 445 454 IPR033131 -
Tpr1g3233 613 MobiDBLite consensus disorder prediction 16 31 - -
Tpr1g3233 613 PANTHER PECTINESTERASE 28 611 - -
Tpr1g3233 613 MobiDBLite consensus disorder prediction 1 31 - -
Tpr1g3233 613 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 82 241 IPR035513 -
Tpr1g3233 613 SUPERFAMILY Pectin lyase-like 297 610 IPR011050 -
Tpr1g3233 613 SMART PMEI_2 79 239 IPR006501 GO:0004857
Tpr1g3233 613 Gene3D - 294 611 IPR012334 -
Tpr1g3233 613 PANTHER PECTINESTERASE 28 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3233 Tpr-Chr1 36771250 36775580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3233 1 612 Carbohydrate Esterase AT5G53370 61.201 0.0 782
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3233 - - gmx:106796002 926.776