Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3232 ATGATGGATTTGGATAGCATTGAGTGTGTTTCATCTTCTGATGGAATGGATGAAGATGAGATCCAACATCGAATTCTTCATCCTCATCCACATCATCATCATCACACTGAGTTTTCTTCCTTGAAACCTCGTAATGGAAATAATAATAATCATGTTGTTGGTTCTACAGCTATTGCTCCTGCAACTAGTGTTCATGAGTTGTTGGAATGTCCTGTTTGTACTAATTCAATGTATCCTCCAATTCATCAGTGCCACAATGGTCACACATTATGTTCCACATGTAAAACAAGGGTGCACAATCGATGTCCGACTTGCAGACAAGAGCTTGGAGATATTAGGTGTCTGGCACTAGAGAAGGTTGCCGAATCACTTGAGTTACCATGCAAGTACTATTCTCTTGGATGTCCAGAAATCTTTCCTTACTACAGCAAGCTTAAGCATGAGCTGATATGCAATTTTAGACCATACACTTGTCCTTATGCTGGATCAGAGTGCTCTGCTGTTGGCGATATTTCCTACCTCGTTGCACATTTAAGGGATGACCATAAGGTGGACATGCACACAGGATGCACATTCAATCATCGGTATGTGAAGTCAAATCCGCGTGAAGTAGAGAATGCTACTTGGATGCTCACTGTATTTCATTGTTTTGGCCAATACTTTTGCCTTCACTTTGAAGCTTTCCAGCTAGGCATGGCTCCAGTTTACATGGCATTCCTTCGTTTCATGGGAGACGAGAACGAAGCTCGGAACTATACTTATAGCCTCGAGGTTGGAGCAAATGGAAGAAAACTCACTTGGGAGGGCACACCACGGAGTATCCGTGATAGCCACCGTAAAGTACGAGATAGCCACGATGGTCTGATAATTCAACGAAATATGGCCCTCTTTTTCTCTGGTGGTGATAGGAAGGAACTGAAACTAAGAGTCACAGGAAGAATATGGAAAGAACAACAGAATCCAGATGGTGGAGTGTGCATACCAAATCTTTGCAACTGA 999 0.4254 MMDLDSIECVSSSDGMDEDEIQHRILHPHPHHHHHTEFSSLKPRNGNNNNHVVGSTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHELICNFRPYTCPYAGSECSAVGDISYLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYTYSLEVGANGRKLTWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDGGVCIPNLCN* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3232 332 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 2 323 - -
Tpr1g3232 332 SUPERFAMILY TRAF domain-like 123 315 - -
Tpr1g3232 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 177 IPR013083 -
Tpr1g3232 332 SUPERFAMILY RING/U-box 57 112 - -
Tpr1g3232 332 CDD RING-HC_SIAHs 68 106 - -
Tpr1g3232 332 Pfam Seven in absentia protein family 112 311 IPR018121 GO:0005737|GO:0006511|GO:0007275
Tpr1g3232 332 CDD Sina 184 312 - -
Tpr1g3232 332 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 2 323 - -
Tpr1g3232 332 ProSiteProfiles Zinc finger RING-type profile. 70 106 IPR001841 -
Tpr1g3232 332 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 178 311 IPR008974 GO:0005515
Tpr1g3232 332 ProSiteProfiles Zinc finger SIAH-type profile. 123 183 IPR013010 GO:0008270
Tpr1g3232 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 122 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3232 Tpr-Chr1 36762722 36767350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3232 54 318 C3H Transcription Factor Family AT2G41980 78.731 5.04e-161 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3232 K04506 - tcc:18605771 640.188