Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3229 ATGGGAAGAAAAGGAGGAAGCTGGTTCTCTTCTGTTAAAAAAGTTTTTAAGTCATCATCGTCGTCTTCTAAAGACACGTCAGTGCCTGTCTCCACGCCCGTGCAGCCGGACAAAAAGAAGGAAAACAGAGAGAAATTGGGGCATGAAGCGGCAGAGGAGGTGTCGTTCGAGCATTTTCCTGCAGAAAGTTCACCTGATGATGTAACCAATGAAGAGAGTACGACATCAACACCTGCGAGGGACGATAGAAATCATGCCATTGCCGTTGCAGAAGCTACTGCAGCAGCTGCTGAAGCTGCTGTGGTAGCGGCTCAAGCAGCTGCAAGAGTTGTGAGATTGGCCGGTTATGGACGCCAATCTAAAGAAGATAGAGCAGCAACATTCATTCAATCATACTATAGAGGATACCTAGCTCGACGTGCACTGCGCGCATTGAAAGGATTAGTGAGGCTACAAGCATTGGTGCGAGGACACAATGTGCGCAAGCAAGCGCAAATGACAATGCGATGTATGCAAGCATTAGTACGGGTGCAGGCACGAGTGCGAGCACGCCGGATTCAGTTGAGTCATGAGAATCTTGAGAAAGCAATGGAGGAAGAGCAAGAATTTTTGAGACAACAAGAGACTGTTACTAAGCCTATGAGTCCTATGAGGAGATCATCAGCCATTAATAATAATGGTTGGGATAACAAGAATCAAAGTGTGAATAAAGCTAAAGAAAATGATTTGAGAAAACATGAAGCTGCAATGAAGAGGGAAAGAGCTCTTGCATATGCTTTCAATTATCAGCAGCAACATCAAAAACAACATTTACATAGAAATTCAAATGGTGATGATGTTGACATGGGAACCTATTATCATCCAAATGATCAAGAAAAAGCTCAATGGGGTTGGAACTGGTTGGAGCATTGGATGTCATCACAACCCTACAATGTAAGACCCTTAGGCCCACGTGAGAGTTCTTACATGACACTTCCTTCAACAACATCAAACACAACAGACAACATGTCTGAAAAAACCGTTGAAATGGACATGGTTGCAACACCAAGTAGAAGCAACTACAATTTGGGCCTAATGGGCCAAGAGTTTCATGAAGCAAGCCCAAGATTCAGTAGGCAGTCTCAAAGACCACCTAGCCCAGGTAGGCCCAGTTATATGGCTCCAACTCAATCTGCAAAGGCTAAGGTTAGGGCTGAAGGTCCATTTAAGCAGAGGTTTCCATCTGGGGCTAACTGGCACTCGTCTACTAAGGGAGGATCGGTTATTGGATCGGGCTGTGATTCGTCTAGCTCGGGTGGTGGAACAGCGTCTGTTTACCAGTTTCCAAAAAGCCCAGGCCCAAATGTCAATGGTGTTCGTTCGGAGTCTAGACGGATTGTGGGTGGTAGTCAAGACTACACTGAGGATTGGGCCATTCCACTTGGAGCCCATGGTTGGGCTTAA 1443 0.4574 MGRKGGSWFSSVKKVFKSSSSSSKDTSVPVSTPVQPDKKKENREKLGHEAAEEVSFEHFPAESSPDDVTNEESTTSTPARDDRNHAIAVAEATAAAAEAAVVAAQAAARVVRLAGYGRQSKEDRAATFIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRIQLSHENLEKAMEEEQEFLRQQETVTKPMSPMRRSSAINNNGWDNKNQSVNKAKENDLRKHEAAMKRERALAYAFNYQQQHQKQHLHRNSNGDDVDMGTYYHPNDQEKAQWGWNWLEHWMSSQPYNVRPLGPRESSYMTLPSTTSNTTDNMSEKTVEMDMVATPSRSNYNLGLMGQEFHEASPRFSRQSQRPPSPGRPSYMAPTQSAKAKVRAEGPFKQRFPSGANWHSSTKGGSVIGSGCDSSSSGGGTASVYQFPKSPGPNVNGVRSESRRIVGGSQDYTEDWAIPLGAHGWA* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3229 480 Coils Coil 190 210 - -
Tpr1g3229 480 Pfam IQ calmodulin-binding motif 124 143 IPR000048 GO:0005515
Tpr1g3229 480 Pfam IQ calmodulin-binding motif 149 164 IPR000048 GO:0005515
Tpr1g3229 480 ProSiteProfiles IQ motif profile. 122 150 IPR000048 GO:0005515
Tpr1g3229 480 ProSiteProfiles IQ motif profile. 146 173 IPR000048 GO:0005515
Tpr1g3229 480 MobiDBLite consensus disorder prediction 36 60 - -
Tpr1g3229 480 PANTHER IQ-DOMAIN 5-RELATED 1 454 - -
Tpr1g3229 480 MobiDBLite consensus disorder prediction 366 466 - -
Tpr1g3229 480 Coils Coil 236 256 - -
Tpr1g3229 480 Pfam Protein of unknown function (DUF4005) 371 421 IPR025064 -
Tpr1g3229 480 SMART iq_5 144 165 IPR000048 GO:0005515
Tpr1g3229 480 SMART iq_5 121 143 IPR000048 GO:0005515
Tpr1g3229 480 MobiDBLite consensus disorder prediction 17 84 - -
Tpr1g3229 480 MobiDBLite consensus disorder prediction 408 451 - -
Tpr1g3229 480 Gene3D - 119 174 - -
Tpr1g3229 480 MobiDBLite consensus disorder prediction 17 33 - -
Tpr1g3229 480 PANTHER IQ-DOMAIN 21 1 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3229 Tpr-Chr1 36705241 36710792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3229 1 479 IQD Protein Family AT3G49260 48.515 2.25e-100 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3229 - - gmx:100798026 529.635