Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3216 ATGATGGCAACCATTTTCTCAAGTTCTCGTTTTCTGCTAAATACACTGAAATTCACTTCGCGTTCAAACGCCGTTAACCTAAGAAGAAGTTTCCGTCCATCAGGAATGAATACTTCAGCTAGGGTTTCCAGTAACGGTAGCGGCGGTGCTGTTCGTTTCCCGTTATCTTCATCGAATGCTTTGATCATTCAGAAAGGAGATATCACGAAATGGTCCATTGATGGTTCCACCGATGCAATCGTAAATCCTGCAAATGAGAGAATGCTTGGAGGTGGTGGTGCAGATGGAGCTATACATAGGGCAGCTGGTCCAGATCTTGTTAGAGCATGCCGGAATGTACCAGAAGTCAGGCCTGGAGTTCGCTGCCCAACGGGGGAAGCAAGGATCACACCAGGTTTCCTGCTGCCTGCTTCTCATGTTATTCATACTGTTGGCCCAATCTATGATGTTGATAGTAATCCTGCTGCATCTCTGGCAAGTGCTTACAGAAATAGTTTGAGGGTCGCAAAAGAGAACAACATTCAATACATAGCATTCCCAGCTATATCATGTGGTGTCTATGGATACCCTTACGATGAAGCTGCTACTGTAGCAATTTCTACCATCAAAGAGTTCCAAAATGACTTTAAGGAGGTCCACTTTGTTCTCTTCGCGTCTGATATTTATGACATTTGGTTAAATAAGTCGGATGAATTGTTGAAAGGTTAG 708 0.4393 MMATIFSSSRFLLNTLKFTSRSNAVNLRRSFRPSGMNTSARVSSNGSGGAVRFPLSSSNALIIQKGDITKWSIDGSTDAIVNPANERMLGGGGADGAIHRAAGPDLVRACRNVPEVRPGVRCPTGEARITPGFLLPASHVIHTVGPIYDVDSNPAASLASAYRNSLRVAKENNIQYIAFPAISCGVYGYPYDEAATVAISTIKEFQNDFKEVHFVLFASDIYDIWLNKSDELLKG* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3216 235 Gene3D Leucine Aminopeptidase, subunit E, domain 1 17 234 IPR043472 -
Tpr1g3216 235 Pfam Macro domain 81 198 IPR002589 -
Tpr1g3216 235 CDD Macro_OAADPr_deacetylase 61 228 - -
Tpr1g3216 235 PANTHER GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED 41 234 - -
Tpr1g3216 235 SMART YBR022w_8 60 198 IPR002589 -
Tpr1g3216 235 PANTHER MACRO DOMAIN-CONTAINING PROTEIN VPA0103-LIKE ISOFORM X1 41 234 - -
Tpr1g3216 235 ProSiteProfiles Macro domain profile. 48 233 IPR002589 -
Tpr1g3216 235 SUPERFAMILY Macro domain-like 60 230 IPR043472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3216 Tpr-Chr1 36581491 36585035 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3216 66 171 C2H2 Transcription Factor Family AT5G01310 35.294 1.50e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3216 K23518 - gmx:100811169 358.607