Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3188 ATGAGAGTTTCATCACAAAATTCAGAAACCGAGAGCACCTCAAATTCATCACCACCAACATCACCATGTACAACTAACTCAATTCAAGACCAAGAATCAAACATAAACAACAAGAATCTTAAACGCAACCGTGACTCGAATAGACATCCCGTCTACCGAGGTGTTCGCATGAGAAATTGGGGAAAGTGGGTGTCTGAAATCCGTGAGCCTCGCAAGAAATCACGGATTTGGCTTGGCACTTTCCCCACGGCTGAAATGGCTGCCAGAGCGCATGACGCAGCTGCGCTCTGTGTTAAAGGGAAAACAGCCATTCTCAATTTTCCTCACCTGGCATCATCTCTTCCAAAACCCGTTTCTTTAGCCCCTCGCGATGTTCAAGCCGCGGCAACTAAAGCAGCTCAAATGGACATCAAATTAGAATCACCATCATCTTCTTCTTCATTTACATCGTTGTCATCAATGACATCATCGATAACAACAATCTCATCATCAACAAGTCTGCTAATGAAAACAGCAACAACGATGTCTTCATCAACAGACTTGTCAACTACTTCTGAAGAACTTAGTGAGATTATTGAGCTACCTACTTTGGAAAATGTTTATGATGAGGTTGGAAAAGATGAGTTTTTGTTTGTTGACTCACAATCACAAGACTATGCTTGGATGTATCAGCAACCAATGACATGGTTACATACAACACAAGAAGATGGTTGTTGTGGTGATGATGGTGTTGTAACTAGTTTCGAGAGTTTTCTCTGGAATTACTAG 768 0.418 MRVSSQNSETESTSNSSPPTSPCTTNSIQDQESNINNKNLKRNRDSNRHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDAAALCVKGKTAILNFPHLASSLPKPVSLAPRDVQAAATKAAQMDIKLESPSSSSSFTSLSSMTSSITTISSSTSLLMKTATTMSSSTDLSTTSEELSEIIELPTLENVYDEVGKDEFLFVDSQSQDYAWMYQQPMTWLHTTQEDGCCGDDGVVTSFESFLWNY* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3188 255 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700|GO:0006355
Tpr1g3188 255 PRINTS Ethylene responsive element binding protein signature 74 90 IPR001471 GO:0003700|GO:0006355
Tpr1g3188 255 Pfam AP2 domain 50 100 IPR001471 GO:0003700|GO:0006355
Tpr1g3188 255 MobiDBLite consensus disorder prediction 1 36 - -
Tpr1g3188 255 SUPERFAMILY DNA-binding domain 51 109 IPR016177 GO:0003677
Tpr1g3188 255 CDD AP2 52 110 IPR001471 GO:0003700|GO:0006355
Tpr1g3188 255 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 5 238 - -
Tpr1g3188 255 Gene3D AP2/ERF domain 51 109 IPR036955 GO:0003700|GO:0006355
Tpr1g3188 255 SMART rav1_2 51 114 IPR001471 GO:0003700|GO:0006355
Tpr1g3188 255 ProSiteProfiles AP2/ERF domain profile. 51 108 IPR001471 GO:0003700|GO:0006355
Tpr1g3188 255 MobiDBLite consensus disorder prediction 1 50 - -
Tpr1g3188 255 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3188 Tpr-Chr1 36335973 36336974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3188 25 240 AP2-EREBP Transcription Factor Family AT5G11590 53.153 1.31e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr1g3188 AP2 2.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3188 K09286 - gmx:100305349 234.572