Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3185 ATGGCCAAAATTGCATTAGGAACAACCCGAGAGGCCACTCAGCCTGATTGCATCCAGGCTCTAATTGTTGAATTCATTGCCACCTTTCTCTTTGTCTTTGCTGGTGTTGGTTCTGCAATGACTGCTGATAAGCTAAGTGGAGATGCATTAGTAGGATTGTTTTTTGTTGCTATAGCACATGCTCTTGTGGTGGCTGTAATGATTTCCGCCGCACATATTTCTGGTGGCCATTTGAATCCTGCCGTGACCTTGGGTCTCCTCGTTGGCGGCCACATCACCATCTTTCGATCTGTCCTATATTGGATTGATCAATTAGTAGCATCTGCAGCAGCTAGTTATCTTCTTTATTATCTCACCGGTGGATTGACAACTCCAGCTCATACACTTGCAAGTGGAATAGGGTACACTCAAGGAGTAGTTTGGGAGATTGTGTTGACATTCTCTTTGTTGTTCACTGTTTATGCAACAATGGTTGATCCAAAGAAAGGAGCACTTGCTGGGCTTGGCCCAACTTTGGTTGGGTTTGTGGTTGGGGCTAACATCTTGGCTGGTGGGGCTTTTTCAGCTGCTTCAATGAACCCAGCAAGATCTTTTGGGCCTGCATTGGTTAGTGGAAATTGGACTGATCATTGGGTTTATTGGGTTGGGCCTCTTATTGGTGGTGGGCTTGCTGGTTTTATTTATGAGAATTTCTTCATCAATAGAGATCATGTTCCTTTAGTTGCAGATGAAGAAAGCTATTAA 744 0.4422 MAKIALGTTREATQPDCIQALIVEFIATFLFVFAGVGSAMTADKLSGDALVGLFFVAIAHALVVAVMISAAHISGGHLNPAVTLGLLVGGHITIFRSVLYWIDQLVASAAASYLLYYLTGGLTTPAHTLASGIGYTQGVVWEIVLTFSLLFTVYATMVDPKKGALAGLGPTLVGFVVGANILAGGAFSAASMNPARSFGPALVSGNWTDHWVYWVGPLIGGGLAGFIYENFFINRDHVPLVADEESY* 248
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3185 247 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr1g3185 247 PRINTS Major intrinsic protein family signature 59 83 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr1g3185 247 PRINTS Major intrinsic protein family signature 96 115 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr1g3185 247 PRINTS Major intrinsic protein family signature 141 159 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr1g3185 247 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr1g3185 247 PRINTS Major intrinsic protein family signature 211 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr1g3185 247 SUPERFAMILY Aquaporin-like 11 240 IPR023271 -
Tpr1g3185 247 CDD MIP 19 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr1g3185 247 ProSitePatterns MIP family signature. 77 85 IPR022357 -
Tpr1g3185 247 PANTHER AQUAPORIN-8 2 246 IPR034294 -
Tpr1g3185 247 Pfam Major intrinsic protein 13 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr1g3185 247 PANTHER AQUAPORIN TIP4-1 2 246 - -
Tpr1g3185 247 Gene3D Glycerol uptake facilitator protein. 2 244 IPR023271 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tpr1g3185 Tpr-Chr1 36306331 36307951 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3185 1 245 Major Intrinsic Protein MIP AT2G25810 78.776 1.87e-133 374
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3185 K09873 - gmx:100811447 435.261