Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3184 ATGGAAAGAGTTGTTGGTGGAAAGTATAGAATTGGTCGGAAAATTGGTAGTGGATCATTTGGTGAAATTTATATTGGGGCACATATTGTGACTTCTGAGCTTGTTGCCATTAAGAAGGAGAGCAAGAAAACCAAACAACCACAGCTACTATATGAGGCAAAGTTATATAATATTCTTAAAGGAGGAAGTGGTATTCCAAGAATGAAATGGTTTGGTACTGATGGAGACTATAATGTTCTAGTTCTTGAACTTATGGGACCGAGTCTCGATGACCTCCTTTACTACTGTAGTGGCAAGTTTTCGCTAAAATCGGTTTTGATGTTGGCTGATCAGATGCTTACGAGGATAGAGTTTCTACATTCGAAGGGATTACTGCACAGAGATATCAAACCAGATAACTTCCTCATGGGTCTTGGGAAGAAAGCAACTCAGGTTTGTATGATTGATTTTGGACTTTCAAAAGGATATAGGGATCCTATCAGTTACAAGCATATCCCTTACAGAGAGAACAAAAACTTAACAGGAACAGCGCGTTATGCAAGTTGCAATACTCATAAAGGAATTGAGCAAAGTCGCAGAGATGATTTGGAGTCTCTTGGCTATGTTCTTTTGTACTTTTTAAGAGGAAGCCTTCCTTGGCAGGGTCTGCAAGCTGCCACCAGAATGCAAAAATATGAAAAAATTTGCAATATGAAGTTCTCAACTCGTGTTGAGGTACTTTGCAAGTCATATCCCGTGGAGTTTGCGTCTTACTTTCATTATTGCCGCTCCTTGTCATTTGATCAACGACCAGATTATGGATATTTGAAGCGACTGTTTCGTGAATTGTTCACTTCTAAAGGATATGAGGCTGACTATTTATATGACTGGACGATTTTAAAATATCAGGAGATTCAACAGGCAAAGGAACAAAATCTATCAATTGCTCCAGTTGCTATGCCTACCAGTCTTGAGCCAGTGGATGTGGATGAGCATACAGAAGTCAATGATTGTACTCAAAATGCTGTGGCAAAACCAACAATCTATACCGATCGCCCGCGTGTTTGTATGAAGCTCAGGGTAGCTGTTGAAAATACCGATCTTGATGATGAGATTGAAACAGATAAACAGAATGTGAATACTAGTTTACCTATTTCCACTGTCACGCCTATAGTGTCTACAGAAAATGTCGCAAAACCAGAAAGCACTGTAGAAGTCTCAAACCCGGATGGCGTGTTAGGGAGTAAATGTGGTGTTCCAGATGATGTTGTTCCTTCACTACGCCGAGTTTCATCCATCAATTAG 1284 0.3995 MERVVGGKYRIGRKIGSGSFGEIYIGAHIVTSELVAIKKESKKTKQPQLLYEAKLYNILKGGSGIPRMKWFGTDGDYNVLVLELMGPSLDDLLYYCSGKFSLKSVLMLADQMLTRIEFLHSKGLLHRDIKPDNFLMGLGKKATQVCMIDFGLSKGYRDPISYKHIPYRENKNLTGTARYASCNTHKGIEQSRRDDLESLGYVLLYFLRGSLPWQGLQAATRMQKYEKICNMKFSTRVEVLCKSYPVEFASYFHYCRSLSFDQRPDYGYLKRLFRELFTSKGYEADYLYDWTILKYQEIQQAKEQNLSIAPVAMPTSLEPVDVDEHTEVNDCTQNAVAKPTIYTDRPRVCMKLRVAVENTDLDDEIETDKQNVNTSLPISTVTPIVSTENVAKPESTVEVSNPDGVLGSKCGVPDDVVPSLRRVSSIN* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3184 427 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Tpr1g3184 427 PANTHER CASEIN KINASE-RELATED 1 402 - -
Tpr1g3184 427 Gene3D Transferase(Phosphotransferase) domain 1 1 335 - -
Tpr1g3184 427 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 402 - -
Tpr1g3184 427 SMART serkin_6 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3184 427 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3184 427 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3184 427 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Tpr1g3184 427 ProSitePatterns Protein kinases ATP-binding region signature. 15 39 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3184 Tpr-Chr1 36298568 36304039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3184 8 213 MAP Kinase Kinase Kinase AT1G54960 27.523 1.46e-14 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Tpr1g3184 Pkinase 9.3e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3184 K08960 - gmx:100782913 580.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3184 1 36298568 36304039 Tpr1g3184 1 36298568 36304039 ECH