Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3175 ATGGACGGTGACCAAAAAATGGCCGTCTCTCAGGTGGATGGACACAGTGACGGTGTTCAGAAAATTAGAGCAGCATTGCACGGGAGGACTACTGGTCCTGCAAGGCGTTCTACAAAAGGGCAATGGACTCCCGAAGAGGATGAGACATTGCGGCTTGCTGTTCAGCGTTTCCAAGGAAAAAATTGGAAAAAAATAGCGGAGTGTTTCAAGGATAGAACTGATGTCCAATGCTTACATAGGTGGCAGAAAGTGTTGAATCCCGAACTTGTAAAAGGGCCATGGTCTAAAGAGGAGGATGAAGTGATGATTGAATTGGTGAACAAATATGGGCCTAAAAAGTGGTCAACTATCGCACAACATTTACCTGGACGTATTGGGAAGCAATGTCGAGAAAGGTGGCATAATCATCTTAATCCTGCTATAAACAAGGAAGCATGGACACAGGAAGAGGAGTTGGCTCTAATACATGCTCATCAGATTTATGGGAACAAATGGGCGGAATTAACGAAGTTTTTGCCTGGAAGGACAGACAATGCTATTAAAAACCACTGGAACAGTTCGGTCAAAAAGAAATTGGATTCTTACTTGGCATCAGGCCTGCTTACTCAGTTTCAGTCTGTACCTCATGTTGGAAATCCTAGTCAACCAATGGTTGCAACATCTTCAAGGTTGCAATGTAAGGAAGAAGATAATGTTCTTCAGGGGACTGAAGGAGATGAATTTTTAGAGTGTAGCCACGAGTCACCCAATGCTCTCCAATTTCCATCCACTAGAGAGATGACCAGTGTTGACTCACAAACTGTAGGGGGATATAGGCCAAATGAAGAATGTAGTCTTGCGACGGATCATAGTCCAAGTCAAGCATCCTGTTCAGAGCCATGTTATCTAGCAATTGACGCTGTTACTTTATGCATCTCAGAAATTGCTCATCATGATGCATGTTCTTCTGAATTCAGTGAACGTATGCATGAACCAAATTCTACAAATGAGGATGACCAGTTTAATTTACATTCCTTGCCCAATATTTCATCAATGGAATTAGGGGAGGACTCCTCGCAGTTGCAAAGAGATTGTACAGAACCTAGTGGAATATGCGGCTTGGTGAATGTTCCATATCAAACTTCAGTGGATTTAGCTGTTTCAACACCCATGGAAACTGCATCTATGGATTCTGCTAAACCAGATCATATGTTGATAACTGACGACGAATGTTGCAGAGTCCTGTTTTCAGAGGCAAAAAATGATAGATGTTTTATCCCTGGAGATTATAATAAAGGTGTTGATGCTGTTGAATTTTCTGGTCACCCTGCGGTTTGTCAATCATGTCATATTCAGATTTCCGAAACTGGTGGAACCTCAACTCAGCCAATATCTTGTCCTCAGTGTTCTAATAATTTTAAAGGAATGTTATCCTCCCAATCTACCCGTCCAGTGCATTCTGCTGAGCATGAGGATCGACAGTTTGTCTCCAGAGCACATGATGACTTCACTTATGCCAACGACACATCCAGTTCTCGTTGTATTGATGCTATAGATAGTACAGTAATGCAAGATGTTAAGCAAACCTGTTATCCAACAGATGAAAAGCCAAACAAGGACACAAAAAAGGAGGACAACGGAGCACTATGTTATGAACCTCCCCGTTTTCCAAGCTTGGACATTCCTTTCTTGAGCTGTGATCTTGTACAATCTGGGGGTGATATGCAACAAGAATTTAGTCCTCTGGGTATCCGCCAGTTGATGATGTCTTCTATGAACTGCCTGACTCCGTCAAGGTTGTGGGACTCGCCTTCTCGTGATGATAGTCCAGAAGCATTATTGAAAAGTGCTGCTAAAACTTTTACGGGTACACCATCAATATTAAAGAAACGGTGCCGGGATTTGTTATCGCCACTTTCAAATAAAAGAATTGGTAAGAAACTTGAGACTGACATGACATCCTCTTTGGCTGAAGCTTTTTCTAGTTTGGAAGCAGATATACTTTCTCCATCTTCATTGCAAAAGCAAAATTCTGTGGCTTCTGGTTTTGATGACGATAAAGAAAATTGTGGAGAAGCTGATAAAGGTAAACAAGTAGAGGAGACAATTAAATCTGTAATTTTGGAAGAAAATAAGTCTCAAAGAGATGCTCTTGACAGTAATTCTCCTGGTAAGGTTAAGAAGCAACCTTTTGCTGTCGATTCGAAAATGAAGATTGACGCTGCTGCTGAGAACGCGCATCAATCTTCTGGAGTTTTGTCTGAACATGATAGGAACGACCTTTCATTATATTCATCTGACCAAGTTGGTTTTAGAGACAGAGTTCCCAGAAACTCGAACAATAGGAGCTCGGAAATAGCTCCAAACCAGAGCATCCCTTCAAAATTATCTTCTGAGAACCAATGCTCAAGGTTTAGCTCTCCTTGTGTTCGTGCAAAGGAGCATGAAAATCTTACAGTTTCAGTTACTCGTGTAAAAGCTCCTGGAGCGAATTTGAGTGATCAGAGTAAAAATGATGGAGGTTTTGAAACGTGTAGCATATTTGGTGGAACACCTTTCGGGAAAGGTTTTGAATCACCTTCTCCGTGGAAATCTCCTTGGCTCAGGAATACTTTTCTCTGTAGCCCCAATCCTGAATTAACAATTGAGGATTTTGGATTTTTCAAGAGTCCGGGAGGTGATAAAAGTTACGATGCTATCGGGTTGTTACAACAGGTCGGTGAACAAACTGCTGCAACATACGAAAATGCACAGGAGATTTTGAAAAATGATACTCCTAAAGCATTACCTAAAGATGCATCTGGAAACGATAAGAATAGCGACGAGGAAAACAACAATCCTAGCAAGGCAAACAGTTCTAAATATACTTCAAATGATTTGGTTGAGTGTCGCATGCTTGATTTTAGTGAATGCGGAACACCAGAAAAGGGTGATAGCAGCAAATCCTCAGCTAGTGAGCAATGA 2943 0.4145 MDGDQKMAVSQVDGHSDGVQKIRAALHGRTTGPARRSTKGQWTPEEDETLRLAVQRFQGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDEVMIELVNKYGPKKWSTIAQHLPGRIGKQCRERWHNHLNPAINKEAWTQEEELALIHAHQIYGNKWAELTKFLPGRTDNAIKNHWNSSVKKKLDSYLASGLLTQFQSVPHVGNPSQPMVATSSRLQCKEEDNVLQGTEGDEFLECSHESPNALQFPSTREMTSVDSQTVGGYRPNEECSLATDHSPSQASCSEPCYLAIDAVTLCISEIAHHDACSSEFSERMHEPNSTNEDDQFNLHSLPNISSMELGEDSSQLQRDCTEPSGICGLVNVPYQTSVDLAVSTPMETASMDSAKPDHMLITDDECCRVLFSEAKNDRCFIPGDYNKGVDAVEFSGHPAVCQSCHIQISETGGTSTQPISCPQCSNNFKGMLSSQSTRPVHSAEHEDRQFVSRAHDDFTYANDTSSSRCIDAIDSTVMQDVKQTCYPTDEKPNKDTKKEDNGALCYEPPRFPSLDIPFLSCDLVQSGGDMQQEFSPLGIRQLMMSSMNCLTPSRLWDSPSRDDSPEALLKSAAKTFTGTPSILKKRCRDLLSPLSNKRIGKKLETDMTSSLAEAFSSLEADILSPSSLQKQNSVASGFDDDKENCGEADKGKQVEETIKSVILEENKSQRDALDSNSPGKVKKQPFAVDSKMKIDAAAENAHQSSGVLSEHDRNDLSLYSSDQVGFRDRVPRNSNNRSSEIAPNQSIPSKLSSENQCSRFSSPCVRAKEHENLTVSVTRVKAPGANLSDQSKNDGGFETCSIFGGTPFGKGFESPSPWKSPWLRNTFLCSPNPELTIEDFGFFKSPGGDKSYDAIGLLQQVGEQTAATYENAQEILKNDTPKALPKDASGNDKNSDEENNNPSKANSSKYTSNDLVECRMLDFSECGTPEKGDSSKSSASEQ* 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3175 980 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 141 IPR017930 -
Tpr1g3175 980 MobiDBLite consensus disorder prediction 670 690 - -
Tpr1g3175 980 SUPERFAMILY Homeodomain-like 88 184 IPR009057 -
Tpr1g3175 980 Gene3D - 144 203 - -
Tpr1g3175 980 PANTHER MYB PROTEIN-RELATED 12 471 - -
Tpr1g3175 980 PANTHER MYB PROTEIN-RELATED 562 972 - -
Tpr1g3175 980 MobiDBLite consensus disorder prediction 765 792 - -
Tpr1g3175 980 Gene3D - 38 90 - -
Tpr1g3175 980 Pfam Myb-like DNA-binding domain 143 185 IPR001005 -
Tpr1g3175 980 Pfam Myb-like DNA-binding domain 39 85 IPR001005 -
Tpr1g3175 980 Pfam Myb-like DNA-binding domain 91 137 IPR001005 -
Tpr1g3175 980 MobiDBLite consensus disorder prediction 757 792 - -
Tpr1g3175 980 CDD SANT 42 85 IPR001005 -
Tpr1g3175 980 ProSiteProfiles Myb-like domain profile. 86 137 IPR001005 -
Tpr1g3175 980 ProSiteProfiles Myb-like domain profile. 34 85 IPR001005 -
Tpr1g3175 980 MobiDBLite consensus disorder prediction 674 690 - -
Tpr1g3175 980 SMART sant 90 139 IPR001005 -
Tpr1g3175 980 SMART sant 38 87 IPR001005 -
Tpr1g3175 980 SMART sant 142 190 IPR001005 -
Tpr1g3175 980 SUPERFAMILY Homeodomain-like 40 95 IPR009057 -
Tpr1g3175 980 MobiDBLite consensus disorder prediction 703 724 - -
Tpr1g3175 980 MobiDBLite consensus disorder prediction 25 44 - -
Tpr1g3175 980 CDD SANT 145 185 IPR001005 -
Tpr1g3175 980 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 85 IPR017930 -
Tpr1g3175 980 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 142 192 IPR017930 -
Tpr1g3175 980 CDD SANT 93 137 IPR001005 -
Tpr1g3175 980 MobiDBLite consensus disorder prediction 912 951 - -
Tpr1g3175 980 ProSiteProfiles Myb-like domain profile. 138 188 IPR001005 -
Tpr1g3175 980 PANTHER TRANSCRIPTION REPRESSOR MYB5 12 471 - -
Tpr1g3175 980 PANTHER TRANSCRIPTION REPRESSOR MYB5 562 972 - -
Tpr1g3175 980 Gene3D - 91 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3175 Tpr-Chr1 36218490 36225107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3175 27 970 MYB Transcription Factor Family AT4G32730 41.223 0.0 630
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr1g3175 Myb_DNA-binding 1.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3175 - K09420 aprc:113848458 1295.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3175 1 36218490 36225107 Tpr1g3175 1 36218490 36225107 ECH