Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3166 ATGTGCAGAGAAAAATCCTTGTCCTGCTCTATGGAATCATTCTTATGTTTTCTCCAAATATTTATGGTAATTCTTCTGTTACTACAGCATCAACATCATCAAACATGTGATGCAGCTACTATTACTAATAACCAAACATCTTGTCCACCTTCTTCATGCGGCGAAATCACAAACATAAAACATCCATTTAGGCTTAAGAATGATCCAACATCATGTGGTGATCCAAGATACGAGTTATCCTGCGAAAACAACATGACAATGTTAACTTTGTTTTCGGGTAAATACTATGTGAAAGCAATCAACTACAAAAACTACACAATTCGGTTTGTTGATCCCGGAATTCAAGAGGATGATTGCTCCTCCATTCCTCACAATTACTTATACACTTCTAATTTCACAAGTTATTACCGTTACCTGGAGGAGGATCCATATGAAACCAAACAGTACAGAATAATTAGTGATAATAGTACTAGAGGATTACCAATGTTCCAGCATGTAATATACATGAATTGTAGCAATCCTGTACGAGATGATCCTGCATACGCGGATACAGCTTCTTGCATCAATGGCGGTCATGTTTATGCCATTGCTGGGGATTTGAAGGTTGGTAACTTAAAAGACGATGACTGCCACGTGGAGTTTGTTACCGCGATATCTTATTTCGGTTATAATTACAGCTCTAGTTATTGGGACATTCCGAATCAAAAGTCTTCGTACAGTGAAATTCATAGGATGTTGGAGGGTGGATTTGAAGTATCTTGGATGAGTAATCCTTGTGAAGATCTTTGTGGAGAGCCAGATTGCTATTTAAGTGAAATAACTTGGAGCCTTGAATGCCCGACTGATCAATGTATAACCAAGTTTGGATTTCACATCGATTTTTTCTTTGCAAAGTTGATACAAACATATCGAACAAGGCATACATCAATGTATGAAAACATCGAATATTTTCTTCAAGTGAATTCCCTTATGCCTATAAGGTATTCATACAAAGAGATAAAGAACATGACTAGAGGCTTTAAGGACAAGTTGGGTGAAGGAGGCTATGGTACAGTTTATAAGGGAATGCTTCGCAGCGGGCCTTTGGTAGCCATAAAGATGTTGGGGAAACCTAAGGGTATTGGAAACGGACAAGATTTCATTAATGAAGTTGCAACTATAGGAAGAATACATCACACCAATGTGGTGCGACTTATTGGATTTTGTGTTGAGGGATCAAAACGTGCTCTGGTTTACGATTTTATGCCCAATGGCTCTCTTGATAAATACATTTCCGCTACAAAAGATCACATTTCCTTAACATATAAGCAAATGTACGAGATATCTCTTGCAGTGGCTCGTGGAATTGCTTATTTGCATCAAGGTTGTGACATGCAAATTTTACATTTTGATATCAAGCCCCATAACATACTTCTTGACAAGGACTTTATTGCCAAAGTTTCAGACTTTGGTCTTGCAAAACTTTATCCTCTTGACAATAGCATTGTAACTTTGACGGCCGCAAGAGGGACGGTTGGTTACATGGCTCCAGAATTGTTCTACAAAAATATTGGCGGAGTTTCCTATAAGGCTGATGTATATAGTTTTGGAATGCTCTTAATGGAAATAGCAAACAGAAGAAGAAATTTGAACTCAAATGCAGATAAGTCAAGCCAAATTTTCTTTCCCTATTGGATTTACAATGAATTGATTGAAGAAAGGGAGATAGAAACATTGGGAAAAGCTACCGACGACGAAAAGAAAAATGTGATAAAGATGTTCATTGTTGCTTTATGGTGTATACAATTGAACCCCAGTGATCGCCCTTCAATGGACAAAGTAATAGAAATGCTCGAAGGAGCAACTGAAGACATTGACATTCCTCCAAAACCTTCTCCATATCCATCTGAAATTGTTCAAGATAATGAAATTAGCTCCAGTGAATCTGCATCGGATGAAGATGTCACCGGCTCGATTAGTTTTCTTGAGGAAACTACAGAAGATCCTTTGCTGTAG 1995 0.3784 MCREKSLSCSMESFLCFLQIFMVILLLLQHQHHQTCDAATITNNQTSCPPSSCGEITNIKHPFRLKNDPTSCGDPRYELSCENNMTMLTLFSGKYYVKAINYKNYTIRFVDPGIQEDDCSSIPHNYLYTSNFTSYYRYLEEDPYETKQYRIISDNSTRGLPMFQHVIYMNCSNPVRDDPAYADTASCINGGHVYAIAGDLKVGNLKDDDCHVEFVTAISYFGYNYSSSYWDIPNQKSSYSEIHRMLEGGFEVSWMSNPCEDLCGEPDCYLSEITWSLECPTDQCITKFGFHIDFFFAKLIQTYRTRHTSMYENIEYFLQVNSLMPIRYSYKEIKNMTRGFKDKLGEGGYGTVYKGMLRSGPLVAIKMLGKPKGIGNGQDFINEVATIGRIHHTNVVRLIGFCVEGSKRALVYDFMPNGSLDKYISATKDHISLTYKQMYEISLAVARGIAYLHQGCDMQILHFDIKPHNILLDKDFIAKVSDFGLAKLYPLDNSIVTLTAARGTVGYMAPELFYKNIGGVSYKADVYSFGMLLMEIANRRRNLNSNADKSSQIFFPYWIYNELIEEREIETLGKATDDEKKNVIKMFIVALWCIQLNPSDRPSMDKVIEMLEGATEDIDIPPKPSPYPSEIVQDNEISSSESASDEDVTGSISFLEETTEDPLL* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3166 664 PANTHER RUST RESISTANCE KINASE LR10-RELATED 8 282 IPR045874 GO:0004672
Tpr1g3166 664 PANTHER RUST RESISTANCE KINASE LR10-RELATED 286 638 IPR045874 GO:0004672
Tpr1g3166 664 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524
Tpr1g3166 664 SMART serkin_6 338 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3166 664 Gene3D Transferase(Phosphotransferase) domain 1 415 620 - -
Tpr1g3166 664 ProSiteProfiles Protein kinase domain profile. 338 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3166 664 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 8 282 - -
Tpr1g3166 664 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 286 638 - -
Tpr1g3166 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Tpr1g3166 664 Gene3D Phosphorylase Kinase; domain 1 313 414 - -
Tpr1g3166 664 MobiDBLite consensus disorder prediction 618 664 - -
Tpr1g3166 664 Pfam Protein kinase domain 341 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3166 664 MobiDBLite consensus disorder prediction 631 656 - -
Tpr1g3166 664 Pfam Wall-associated receptor kinase galacturonan-binding 48 111 IPR025287 GO:0030247
Tpr1g3166 664 SUPERFAMILY Protein kinase-like (PK-like) 321 612 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3166 Tpr-Chr1 36108408 36111439 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3166 40 653 Receptor kinase-like Gene Family AT5G38260 34.869 1.72e-106 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tpr1g3166 Pkinase 1.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3166 - - mtr:MTR_1g027830 742.265